Information for 3-TCTCCATTAAATT (Motif 5)

A G C T G T A C C G A T G T A C A G T C G T C A A C G T A C G T G T C A C T G A T C G A C G A T A C G T
Reverse Opposite:
C G T A C G T A A C G T A G C T A C G T G T C A C G T A A C G T C T A G C A T G C G T A A C T G C T G A
p-value:1e-14
log p-value:-3.284e+01
Information Content per bp:1.799
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets39.8 +/- 23.7bp
Average Position of motif in Background30.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.65
Offset:5
Orientation:forward strand
Alignment:TCTCCATTAAATT
-----ATTAAA--
 A G C T G T A C C G A T G T A C A G T C G T C A A C G T A C G T G T C A C T G A T C G A C G A T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:2
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TCTCCATTAAATT
---YCATTAMC--
 A G C T G T A C C G A T G T A C A G T C G T C A A C G T A C G T G T C A C T G A T C G A C G A T A C G T
A C G T A C G T A C G T A G C T T G A C C G T A A C G T A C G T C G T A G T C A T G A C A C G T A C G T

PB0005.1_Bbx_1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-TCTCCATTAAATT-
NANTTCATTGAATTA
 A C G T A G C T G T A C C G A T G T A C A G T C G T C A A C G T A C G T G T C A C T G A T C G A C G A T A C G T A C G T
G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A

PB0068.1_Sox1_1/Jaspar

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TCTCCATTAAATT----
-NNNTATTGAATTGNNN
 A G C T G T A C C G A T G T A C A G T C G T C A A C G T A C G T G T C A C T G A T C G A C G A T A C G T A C G T A C G T A C G T A C G T
A C G T T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

PHOX2A/MA0713.1/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TCTCCATTAAATT-
---TAATTAAATTA
 A G C T G T A C C G A T G T A C A G T C G T C A A C G T A C G T G T C A C T G A T C G A C G A T A C G T A C G T
A C G T A C G T A C G T G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A

DUXA/MA0884.1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TCTCCATTAAATT--
--NTGATTAAATTAN
 A G C T G T A C C G A T G T A C A G T C G T C A A C G T A C G T G T C A C T G A T C G A C G A T A C G T A C G T A C G T
A C G T A C G T G A C T G C A T T C A G T G C A A G C T A C G T T C G A T C G A C T G A A G C T G A C T C T G A C T A G

PROP1/MA0715.1/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TCTCCATTAAATT-
---TAATTAAATTA
 A G C T G T A C C G A T G T A C A G T C G T C A A C G T A C G T G T C A C T G A T C G A C G A T A C G T A C G T
A C G T A C G T A C G T G C A T C T G A C G T A G A C T C A G T G C T A C T G A C G T A A G C T C G A T C G T A

GSX2/MA0893.1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TCTCCATTAAATT
-ACTAATTAAA--
 A G C T G T A C C G A T G T A C A G T C G T C A A C G T A C G T G T C A C T G A T C G A C G A T A C G T
A C G T G T C A A T G C G A C T G T C A C G T A G C A T G C A T G C T A T C G A G T C A A C G T A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TCTCCATTAAATT
--NTAATTAATAT
 A G C T G T A C C G A T G T A C A G T C G T C A A C G T A C G T G T C A C T G A T C G A C G A T A C G T
A C G T A C G T A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T

NKX6-2/MA0675.1/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TCTCCATTAAATT
--CTAATTAA---
 A G C T G T A C C G A T G T A C A G T C G T C A A C G T A C G T G T C A C T G A T C G A C G A T A C G T
A C G T A C G T A T G C G A C T G T C A G C T A C G A T G C A T C T G A G C T A A C G T A C G T A C G T