Information for 1-CAATAGGCTGCTA (Motif 3)

A G T C C G T A G C T A A C G T C G T A A C T G A T C G A G T C C G A T A C T G A G T C A C G T C T G A
Reverse Opposite:
A G C T C G T A A C T G T A G C C G T A C T A G T A G C G T A C A C G T G T C A C A G T A C G T C T A G
p-value:1e-15
log p-value:-3.602e+01
Information Content per bp:1.760
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.66%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets36.5 +/- 20.8bp
Average Position of motif in Background62.7 +/- 1.9bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.53
Offset:3
Orientation:forward strand
Alignment:CAATAGGCTGCTA
---TWGTCTGV--
 A G T C C G T A G C T A A C G T C G T A A C T G A T C G A G T C C G A T A C T G A G T C A C G T C T G A
A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:2
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CAATAGGCTGCTA---------
NTNNNNNGTTGCTANGGNNCANA
 A C G T A G T C C G T A G C T A A C G T C G T A A C T G A T C G A G T C C G A T A C T G A G T C A C G T C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

SOX9/MA0077.1/Jaspar

Match Rank:3
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---CAATAGGCTGCTA
GAACAATGG-------
 A C G T A C G T A C G T A G T C C G T A G C T A A C G T C G T A A C T G A T C G A G T C C G A T A C T G A G T C A C G T C T G A
C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----CAATAGGCTGCTA
CCAAAAATAG-------
 A C G T A C G T A C G T A C G T A G T C C G T A G C T A A C G T C G T A A C T G A T C G A G T C C G A T A C T G A G T C A C G T C T G A
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:5
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CAATAGGCTGCTA-----
---NCCGTTGCTANGNGN
 A G T C C G T A G C T A A C G T C G T A A C T G A T C G A G T C C G A T A C T G A G T C A C G T C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

PB0181.1_Spdef_2/Jaspar

Match Rank:6
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CAATAGGCTGCTA--
CTACTAGGATGTNNTN
 A C G T A G T C C G T A G C T A A C G T C G T A A C T G A T C G A G T C C G A T A C T G A G T C A C G T C T G A A C G T A C G T
A G T C G C A T C G T A T G A C C G A T T C G A T A C G C A T G C G T A G A C T C T A G G A C T C G A T T C G A G C A T G A T C

PB0055.1_Rfx4_1/Jaspar

Match Rank:7
Score:0.50
Offset:3
Orientation:reverse strand
Alignment:CAATAGGCTGCTA-----
---NNCGTTGCTATGGNN
 A G T C C G T A G C T A A C G T C G T A A C T G A T C G A G T C C G A T A C T G A G T C A C G T C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.49
Offset:8
Orientation:reverse strand
Alignment:CAATAGGCTGCTA
--------NGCTN
 A G T C C G T A G C T A A C G T C G T A A C T G A T C G A G T C C G A T A C T G A G T C A C G T C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.49
Offset:-6
Orientation:forward strand
Alignment:------CAATAGGCTGCTA-
NTNATGCAAYMNNHTGMAAY
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A G C T A A C G T C G T A A C T G A T C G A G T C C G A T A C T G A G T C A C G T C T G A A C G T
T G C A G C A T C G A T C G T A C A G T A C T G G T A C C G T A C T G A A G C T G T C A A C T G C T A G G T C A C G A T A C T G G T A C T G C A C G T A A G C T

PB0065.1_Sox15_1/Jaspar

Match Rank:10
Score:0.49
Offset:-7
Orientation:forward strand
Alignment:-------CAATAGGCTGCTA
TAGTGAACAATAGATTT---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A G C T A A C G T C G T A A C T G A T C G A G T C C G A T A C T G A G T C A C G T C T G A
G C A T C T A G C A T G C G A T C A T G C T G A C G T A G A T C C G T A C G T A G C A T C G T A C T A G C T G A A G C T G C A T A C G T A C G T A C G T A C G T