p-value: | 1e-6 |
log p-value: | -1.527e+01 |
Information Content per bp: | 1.837 |
Number of Target Sequences with motif | 5.0 |
Percentage of Target Sequences with motif | 0.83% |
Number of Background Sequences with motif | 2.3 |
Percentage of Background Sequences with motif | 0.02% |
Average Position of motif in Targets | 42.2 +/- 26.5bp |
Average Position of motif in Background | 37.6 +/- 10.5bp |
Strand Bias (log2 ratio + to - strand density) | 0.0 |
Multiplicity (# of sites on avg that occur together) | 1.00 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
POL004.1_CCAAT-box/Jaspar
Match Rank: | 1 |
Score: | 0.63 |
Offset: | 1 |
Orientation: | forward strand |
Alignment: | TTYTGGCCAAAAA -ACTAGCCAATCA |
|
|
|
NFIC/MA0161.1/Jaspar
Match Rank: | 2 |
Score: | 0.62 |
Offset: | 4 |
Orientation: | reverse strand |
Alignment: | TTYTGGCCAAAAA ----TGCCAA--- |
|
|
|
E2F7/MA0758.1/Jaspar
Match Rank: | 3 |
Score: | 0.62 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | TTYTGGCCAAAAA- TTTTGGCGGGAAAA |
|
|
|
NFIX/MA0671.1/Jaspar
Match Rank: | 4 |
Score: | 0.61 |
Offset: | 2 |
Orientation: | forward strand |
Alignment: | TTYTGGCCAAAAA --CGTGCCAAG-- |
|
|
|
E2F8/MA0865.1/Jaspar
Match Rank: | 5 |
Score: | 0.58 |
Offset: | 1 |
Orientation: | reverse strand |
Alignment: | TTYTGGCCAAAAA -TTTGGCGGGAAA |
|
|
|
NFIA/MA0670.1/Jaspar
Match Rank: | 6 |
Score: | 0.57 |
Offset: | 2 |
Orientation: | forward strand |
Alignment: | TTYTGGCCAAAAA --GGTGCCAAGT- |
|
|
|
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer
Match Rank: | 7 |
Score: | 0.56 |
Offset: | 3 |
Orientation: | forward strand |
Alignment: | TTYTGGCCAAAAA ---TTGCCAAG-- |
|
|
|
CDX2/MA0465.1/Jaspar
Match Rank: | 8 |
Score: | 0.56 |
Offset: | 3 |
Orientation: | forward strand |
Alignment: | TTYTGGCCAAAAA- ---AAGCCATAAAA |
|
|
|
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer
Match Rank: | 9 |
Score: | 0.56 |
Offset: | 4 |
Orientation: | forward strand |
Alignment: | TTYTGGCCAAAAA--- ----GGCCATAAATCA |
|
|
|
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer
Match Rank: | 10 |
Score: | 0.54 |
Offset: | 5 |
Orientation: | forward strand |
Alignment: | TTYTGGCCAAAAA-- -----GTCATAAAAN |
|
|
|