Information for 2-GAAGAAVAGAAGGACA (Motif 20)

C T A G C G T A C G T A T C A G C G T A C G T A T A C G C G T A C T A G C G T A C G T A C A T G C A T G G T C A T G A C C G T A
Reverse Opposite:
A C G T A C T G A C G T G T A C G T A C A C G T A C G T A G T C A C G T A G T C A C G T A C G T A G T C A C G T A C G T A G T C
p-value:1e-8
log p-value:-1.915e+01
Information Content per bp:1.832
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets41.2 +/- 24.8bp
Average Position of motif in Background41.4 +/- 22.6bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:1
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GAAGAAVAGAAGGACA-
GGAAGGAAGGAAGGAAGG
 A C G T C T A G C G T A C G T A T C A G C G T A C G T A T A C G C G T A C T A G C G T A C G T A C A T G C A T G G T C A T G A C C G T A A C G T
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GAAGAAVAGAAGGACA
-CGGAAGTGAAAC---
 C T A G C G T A C G T A T C A G C G T A C G T A T A C G C G T A C T A G C G T A C G T A C A T G C A T G G T C A T G A C C G T A
A C G T T G A C C T A G T C A G G T C A C G T A T C A G C G A T T C A G T C G A T G C A C T G A T A G C A C G T A C G T A C G T

PB0021.1_Gata3_1/Jaspar

Match Rank:3
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----GAAGAAVAGAAGGACA-
TTTTTAGAGATAAGAAATAAAG
 A C G T A C G T A C G T A C G T A C G T C T A G C G T A C G T A T C A G C G T A C G T A T A C G C G T A C T A G C G T A C G T A C A T G C A T G G T C A T G A C C G T A A C G T
A C G T C A G T G C A T C A G T C G A T C T G A C A T G G C T A A C T G C G T A C G A T G C T A C G T A T A C G T G C A C T G A G C T A A C G T C G T A G T C A T C G A C A T G

Gata1/MA0035.3/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GAAGAAVAGAAGGACA
ANAGATAAGAA-----
 C T A G C G T A C G T A T C A G C G T A C G T A T A C G C G T A C T A G C G T A C G T A C A T G C A T G G T C A T G A C C G T A
C T G A T A G C C G T A A C T G C G T A A C G T C G T A C T G A T C A G T C G A T C G A A C G T A C G T A C G T A C G T A C G T

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:5
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:GAAGAAVAGAAGGACA
--AGAAACGAAAGT--
 C T A G C G T A C G T A T C A G C G T A C G T A T A C G C G T A C T A G C G T A C G T A C A T G C A T G G T C A T G A C C G T A
A C G T A C G T T C G A C T A G C T G A C G T A C G T A A G T C T A C G C G T A C G T A C G T A A T C G A C G T A C G T A C G T

PB0073.1_Sox7_1/Jaspar

Match Rank:6
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------GAAGAAVAGAAGGACA
AATAAAGAACAATAGAATTTCA
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G C G T A C G T A T C A G C G T A C G T A T A C G C G T A C T A G C G T A C G T A C A T G C A T G G T C A T G A C C G T A
G T C A G C T A A C G T C T G A G C T A C G T A C T A G C T G A C G T A A G T C C G T A C T G A C G A T C G T A T C A G G C T A G C T A G A C T G C A T G C A T A G T C G C T A

GATA3/MA0037.2/Jaspar

Match Rank:7
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GAAGAAVAGAAGGACA
--AGATAAGA------
 C T A G C G T A C G T A T C A G C G T A C G T A T A C G C G T A C T A G C G T A C G T A C A T G C A T G G T C A T G A C C G T A
A C G T A C G T C G T A A C T G C G T A A C G T C G T A C G T A C T A G T C G A A C G T A C G T A C G T A C G T A C G T A C G T

FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GAAGAAVAGAAGGACA--
AGTAAACAAAAAAGAACANN
 A C G T A C G T C T A G C G T A C G T A T C A G C G T A C G T A T A C G C G T A C T A G C G T A C G T A C A T G C A T G G T C A T G A C C G T A A C G T A C G T
C G T A C T A G G A C T G T C A G T C A C G T A A G T C C G T A T C G A T C G A T C G A C G T A C T G A C T A G G C T A C G T A T A G C C G T A C G A T C G T A

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GAAGAAVAGAAGGACA
-TGGAACAGMA-----
 C T A G C G T A C G T A T C A G C G T A C G T A T A C G C G T A C T A G C G T A C G T A C A T G C A T G G T C A T G A C C G T A
A C G T C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A A C G T A C G T A C G T A C G T A C G T

Rarb/MA0857.1/Jaspar

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GAAGAAVAGAAGGACA
AAAGGTCAAAAGGTCA
 C T A G C G T A C G T A T C A G C G T A C G T A T A C G C G T A C T A G C G T A C G T A C A T G C A T G G T C A T G A C C G T A
G C T A C T G A T C G A A C T G A C T G C A G T A T G C C T G A G C T A C T G A C T G A C T A G A C T G A G C T A G T C C T G A