Information for 1-TWTMATAGTC (Motif 2)

A C G T C G A T A C G T G T A C C G T A A C G T C G T A A T C G A C G T A G T C
Reverse Opposite:
A C T G C G T A A T G C A C G T G T C A A C G T A C T G C G T A C G T A C G T A
p-value:1e-15
log p-value:-3.602e+01
Information Content per bp:1.884
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.66%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets53.3 +/- 27.5bp
Average Position of motif in Background45.8 +/- 19.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid3a/MA0151.1/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TWTMATAGTC
TTTAAT----
 A C G T C G A T A C G T G T A C C G T A A C G T C G T A A T C G A C G T A G T C
G C A T A C G T A C G T C T G A C G T A A C G T A C G T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--TWTMATAGTC
CCTTTTATAGNC
 A C G T A C G T A C G T C G A T A C G T G T A C C G T A A C G T C G T A A T C G A C G T A G T C
A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

Sox17/MA0078.1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TWTMATAGTC
-CTCATTGTC
 A C G T C G A T A C G T G T A C C G T A A C G T C G T A A T C G A C G T A G T C
A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:TWTMATAGTC
TTTAATTGCN
 A C G T C G A T A C G T G T A C C G T A A C G T C G T A A T C G A C G T A G T C
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

PB0134.1_Hnf4a_2/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:TWTMATAGTC------
GGCAAAAGTCCAATAA
 A C G T C G A T A C G T G T A C C G T A A C G T C G T A A T C G A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

PB0174.1_Sox30_2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---TWTMATAGTC---
NCGTATTATAATCNTA
 A C G T A C G T A C G T A C G T C G A T A C G T G T A C C G T A A C G T C G T A A T C G A C G T A G T C A C G T A C G T A C G T
A T G C A G T C A C T G A C G T G T C A C G A T A G C T G T C A A C G T T C G A C G T A C A G T T G A C G C A T C A G T C T G A

TBP/MA0108.2/Jaspar

Match Rank:7
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------TWTMATAGTC
NNNNNNCTTTTATAN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T G T A C C G T A A C G T C G T A A T C G A C G T A G T C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:8
Score:0.58
Offset:-7
Orientation:reverse strand
Alignment:-------TWTMATAGTC
NNNNNNCTTTTATAN--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T G T A C C G T A A C G T C G T A A T C G A C G T A G T C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T A C G T

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TWTMATAGTC-
-NTAATKGTTT
 A C G T C G A T A C G T G T A C C G T A A C G T C G T A A T C G A C G T A G T C A C G T
A C G T A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T

PB0079.1_Sry_1/Jaspar

Match Rank:10
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------TWTMATAGTC
TATAATTATAATATTC
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T G T A C C G T A A C G T C G T A A T C G A C G T A G T C
A C G T G C T A C A G T G C T A C G T A C G A T C G A T C T G A G A C T C G T A C G T A C G A T C T G A C G A T C A G T T G A C