p-value: | 1e-9 |
log p-value: | -2.197e+01 |
Information Content per bp: | 1.929 |
Number of Target Sequences with motif | 3.0 |
Percentage of Target Sequences with motif | 5.17% |
Number of Background Sequences with motif | 1.9 |
Percentage of Background Sequences with motif | 0.00% |
Average Position of motif in Targets | 40.8 +/- 15.8bp |
Average Position of motif in Background | 36.3 +/- 22.9bp |
Strand Bias (log2 ratio + to - strand density) | 10.0 |
Multiplicity (# of sites on avg that occur together) | 1.33 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer
Match Rank: | 1 |
Score: | 0.60 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -ATGTTAATGCGGGATC TATGCWAATBAV----- |
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PB0024.1_Gcm1_1/Jaspar
Match Rank: | 2 |
Score: | 0.59 |
Offset: | 2 |
Orientation: | reverse strand |
Alignment: | ATGTTAATGCGGGATC-- --NNNNATGCGGGTNNNN |
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Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer
Match Rank: | 3 |
Score: | 0.59 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -ATGTTAATGCGGGATC WATGCAAATGAG----- |
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GCM2/MA0767.1/Jaspar
Match Rank: | 4 |
Score: | 0.57 |
Offset: | 5 |
Orientation: | forward strand |
Alignment: | ATGTTAATGCGGGATC -----TATGCGGGTA- |
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GCM1/MA0646.1/Jaspar
Match Rank: | 5 |
Score: | 0.57 |
Offset: | 5 |
Orientation: | forward strand |
Alignment: | ATGTTAATGCGGGATC -----CATGCGGGTAC |
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POU5F1B/MA0792.1/Jaspar
Match Rank: | 6 |
Score: | 0.56 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -ATGTTAATGCGGGATC TATGCAAAT-------- |
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POU3F1/MA0786.1/Jaspar
Match Rank: | 7 |
Score: | 0.55 |
Offset: | -2 |
Orientation: | forward strand |
Alignment: | --ATGTTAATGCGGGATC TTATGCAAATTA------ |
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POU3F4/MA0789.1/Jaspar
Match Rank: | 8 |
Score: | 0.55 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -ATGTTAATGCGGGATC TATGCAAAT-------- |
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POU2F1/MA0785.1/Jaspar
Match Rank: | 9 |
Score: | 0.54 |
Offset: | -3 |
Orientation: | forward strand |
Alignment: | ---ATGTTAATGCGGGATC AATATGCAAATT------- |
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POU3F2/MA0787.1/Jaspar
Match Rank: | 10 |
Score: | 0.54 |
Offset: | -2 |
Orientation: | forward strand |
Alignment: | --ATGTTAATGCGGGATC TTATGCAAATTA------ |
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