Information for 3-CGGCGTCTTG (Motif 12)

A G T C A C T G A C T G A T G C C T A G A C G T A G T C A C G T A C G T A C T G
Reverse Opposite:
A G T C C G T A C G T A A C T G C G T A A G T C A T C G A G T C A G T C A C T G
p-value:1e-6
log p-value:-1.413e+01
Information Content per bp:1.955
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif3.45%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.8 +/- 24.7bp
Average Position of motif in Background65.7 +/- 24.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PROX1/MA0794.1/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--CGGCGTCTTG
TAAGGCGTCTTG
 A C G T A C G T A G T C A C T G A C T G A T G C C T A G A C G T A G T C A C G T A C G T A C T G
A G C T T C G A G T C A T C A G C T A G G T A C C T A G A G C T G A T C C G A T G A C T T C A G

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CGGCGTCTTG
GCCGCCATCTTG
 A C G T A C G T A G T C A C T G A C T G A T G C C T A G A C G T A G T C A C G T A C G T A C T G
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CGGCGTCTTG
NRRGGGTCTT-
 A C G T A G T C A C T G A C T G A T G C C T A G A C G T A G T C A C G T A C G T A C T G
A C T G T C G A C T A G A C T G A C T G A C T G A C G T A G T C A C G T A G C T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CGGCGTCTTG
VBSYGTCTGG
 A G T C A C T G A C T G A T G C C T A G A C G T A G T C A C G T A C G T A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

YY1/MA0095.2/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CGGCGTCTTG
GCNGCCATCTTG
 A C G T A C G T A G T C A C T G A C T G A T G C C T A G A C G T A G T C A C G T A C G T A C T G
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CGGCGTCTTG
--CTGTCTGG
 A G T C A C T G A C T G A T G C C T A G A C G T A G T C A C G T A C G T A C T G
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

POL006.1_BREu/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CGGCGTCTTG
-GGCGCGCT-
 A G T C A C T G A C T G A T G C C T A G A C G T A G T C A C G T A C G T A C T G
A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T

PH0164.1_Six4/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CGGCGTCTTG---
TNNNNGGTGTCATNTNT
 A C G T A C G T A C G T A C G T A G T C A C T G A C T G A T G C C T A G A C G T A G T C A C G T A C G T A C T G A C G T A C G T A C G T
A G C T T C A G T C G A C A G T C T G A T C A G A C T G A C G T C T A G A C G T G T A C C T G A C G A T C A G T G A C T G T C A C A G T

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CGGCGTCTTG-----
NNTNNTGTCTGGNNTNG
 A C G T A C G T A G T C A C T G A C T G A T G C C T A G A C G T A G T C A C G T A C G T A C T G A C G T A C G T A C G T A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

PB0131.1_Gmeb1_2/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CGGCGTCTTG--
TGGGCGACGTCGTTAA
 A C G T A C G T A C G T A C G T A G T C A C T G A C T G A T G C C T A G A C G T A G T C A C G T A C G T A C T G A C G T A C G T
C A G T C A T G T C A G A C T G G T A C T C A G G C T A T A G C A C T G C A G T A G T C C A T G G A C T A G C T G T C A G C T A