Information for 4-ATGTCATAAC (Motif 9)

G T C A A C G T A T C G A G C T T G A C C G T A A C G T C G T A C T G A G T A C
Reverse Opposite:
A C T G A G C T A C G T C G T A A C G T A C T G C T G A T A G C C G T A A C G T
p-value:1e-6
log p-value:-1.561e+01
Information Content per bp:1.788
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif12.50%
Number of Background Sequences with motif872.0
Percentage of Background Sequences with motif1.79%
Average Position of motif in Targets44.9 +/- 24.4bp
Average Position of motif in Background48.5 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:1
Score:0.74
Offset:2
Orientation:forward strand
Alignment:ATGTCATAAC--
--GTCATAAAAN
 G T C A A C G T A T C G A G C T T G A C C G T A A C G T C G T A C T G A G T A C A C G T A C G T
A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T

CDX2/MA0465.1/Jaspar

Match Rank:2
Score:0.73
Offset:0
Orientation:forward strand
Alignment:ATGTCATAAC-
AAGCCATAAAA
 G T C A A C G T A T C G A G C T T G A C C G T A A C G T C G T A C T G A G T A C A C G T
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A

CDX1/MA0878.1/Jaspar

Match Rank:3
Score:0.73
Offset:2
Orientation:forward strand
Alignment:ATGTCATAAC-
--GCAATAAAA
 G T C A A C G T A T C G A G C T T G A C C G T A A C G T C G T A C T G A G T A C A C G T
A C G T A C G T T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A

HOXA10/MA0899.1/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:forward strand
Alignment:ATGTCATAAC--
-GGTAATAAAAA
 G T C A A C G T A T C G A G C T T G A C C G T A A C G T C G T A C T G A G T A C A C G T A C G T
A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

PH0046.1_Hoxa10/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-ATGTCATAAC-----
TAGGTAATAAAATTCA
 A C G T G T C A A C G T A T C G A G C T T G A C C G T A A C G T C G T A C T G A G T A C A C G T A C G T A C G T A C G T A C G T
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

PH0013.1_Cdx2/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--ATGTCATAAC----
AAAGGTAATAAAATTT
 A C G T A C G T G T C A A C G T A T C G A G C T T G A C C G T A A C G T C G T A C T G A G T A C A C G T A C G T A C G T A C G T
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

PH0012.1_Cdx1/Jaspar

Match Rank:7
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--ATGTCATAAC----
TAAGGTAATAAAATTA
 A C G T A C G T G T C A A C G T A T C G A G C T T G A C C G T A A C G T C G T A C T G A G T A C A C G T A C G T A C G T A C G T
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

PB0120.1_Foxj1_2/Jaspar

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:ATGTCATAAC-----
ATGTCACAACAACAC
 G T C A A C G T A T C G A G C T T G A C C G T A A C G T C G T A C T G A G T A C A C G T A C G T A C G T A C G T A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.66
Offset:1
Orientation:forward strand
Alignment:ATGTCATAAC-
-NCYAATAAAA
 G T C A A C G T A T C G A G C T T G A C C G T A A C G T C G T A C T G A G T A C A C G T
A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.66
Offset:1
Orientation:forward strand
Alignment:ATGTCATAAC---
-NGYCATAAAWCH
 G T C A A C G T A T C G A G C T T G A C C G T A A C G T C G T A C T G A G T A C A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A