Information for 3-GCAYATACGR (Motif 8)

A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A C T G C T G A
Reverse Opposite:
A G C T G T A C A C T G A C G T C G T A A C G T C T A G A C G T A C T G A G T C
p-value:1e-6
log p-value:-1.569e+01
Information Content per bp:1.907
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif3.12%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.8 +/- 21.1bp
Average Position of motif in Background50.9 +/- 41.4bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----GCAYATACGR--
AGCGGCACACACGCAA
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A C T G C T G A A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0026.1_Gm397_1/Jaspar

Match Rank:2
Score:0.66
Offset:-7
Orientation:forward strand
Alignment:-------GCAYATACGR
CAGATGTGCACATACGT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A C T G C T G A
G T A C G C T A C A T G C G T A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A A G C T G T C A G T A C C A T G G A C T

PB0208.1_Zscan4_2/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GCAYATACGR--
CGAAGCACACAAAATA
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A C T G C T G A A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

PB0104.1_Zscan4_1/Jaspar

Match Rank:4
Score:0.62
Offset:-7
Orientation:forward strand
Alignment:-------GCAYATACGR
TACATGTGCACATAAAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A C T G C T G A
C A G T G T C A T G A C C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A A G C T G C T A G C T A C G T A G T C A

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GCAYATACGR
ATGMATATDC--
 A C G T A C G T A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A C T G C T G A
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T

PB0106.1_Arid5a_2/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCAYATACGR-----
CATACAATACGAAATAA
 A C G T A C G T A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A C T G C T G A A C G T A C G T A C G T A C G T A C G T
A T G C C T A G G A C T C G T A T G A C C G T A T G C A A C G T T G C A T A G C T A C G C T G A C T G A C G T A A G C T T C G A T C G A

SPDEF/MA0686.1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCAYATACGR--
-TACATCCGGGT
 A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A C T G C T G A A C G T A C G T
A C G T G A C T C T G A A G T C C G T A G A C T G T A C A G T C A C T G A T C G A C T G G C A T

SRF/MA0083.3/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GCAYATACGR---
TGACCATATATGGTCA
 A C G T A C G T A C G T A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A C T G C T G A A C G T A C G T A C G T
G C A T A C T G G T C A A T G C A G T C C G T A C G A T C T G A A C G T C G T A G C A T T A C G C T A G C A G T T G A C C G T A

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCAYATACGR
GCACGTAY--
 A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A C T G C T G A
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T A C G T A C G T

Twist2/MA0633.1/Jaspar

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GCAYATACGR-
-NACATATGGN
 A C T G A G T C C G T A A G T C C G T A A C G T C G T A A G T C A C T G C T G A A C G T
A C G T G T C A G T C A A G T C C G T A A G C T C T G A A C G T A C T G A C T G A G C T