Information for 1-AWGYTWATGC (Motif 7)

C T G A C G A T A C T G A G C T A C G T C G T A G T C A A C G T A C T G A G T C
Reverse Opposite:
A C T G A G T C C G T A A C G T C G A T C G T A C T G A A G T C C G T A A G C T
p-value:1e-7
log p-value:-1.647e+01
Information Content per bp:1.831
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif6.25%
Number of Background Sequences with motif103.8
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets43.2 +/- 26.7bp
Average Position of motif in Background47.0 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AWGYTWATGC-
TATGCWAATBAV
 A C G T C T G A C G A T A C T G A G C T A C G T C G T A G T C A A C G T A C T G A G T C A C G T
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AWGYTWATGC-
WATGCAAATGAG
 A C G T C T G A C G A T A C T G A G C T A C G T C G T A G T C A A C G T A C T G A G T C A C G T
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G

POU3F4/MA0789.1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AWGYTWATGC
TATGCAAAT--
 A C G T C T G A C G A T A C T G A G C T A C G T C G T A G T C A A C G T A C T G A G T C
G C A T C T G A G A C T C A T G A G T C C G T A G C T A C G T A C G A T A C G T A C G T

GSC/MA0648.1/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AWGYTWATGC--
--GCTAATCCCC
 C T G A C G A T A C T G A G C T A C G T C G T A G T C A A C G T A C T G A G T C A C G T A C G T
A C G T A C G T T A C G G A T C A G C T C T G A C G T A A C G T A G T C A G T C A T G C G A T C

PH0035.1_Gsc/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AWGYTWATGC-----
AATCGTTAATCCCTTTA
 A C G T A C G T C T G A C G A T A C T G A G C T A C G T C G T A G T C A A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
G C T A T C G A G C A T G T A C T C A G G A C T C G A T C T G A C G T A A C G T G A T C A G T C A T G C A G C T C A G T G C A T T G A C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AWGYTWATGC
--GCTAATCC
 C T G A C G A T A C T G A G C T A C G T C G T A G T C A A C G T A C T G A G T C
A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C

PH0123.1_Obox3/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AWGYTWATGC------
ATAGTTAATCCCCCNNA
 A C G T C T G A C G A T A C T G A G C T A C G T C G T A G T C A A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A

POU5F1B/MA0792.1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AWGYTWATGC
TATGCAAAT--
 A C G T C T G A C G A T A C T G A G C T A C G T C G T A G T C A A C G T A C T G A G T C
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T

PB0145.1_Mafb_2/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AWGYTWATGC-----
ANATTTTTGCAANTN
 C T G A C G A T A C T G A G C T A C G T C G T A G T C A A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T
C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

PH0015.1_Crx/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AWGYTWATGC------
AGGCTAATCCCCAANG
 C T G A C G A T A C T G A G C T A C G T C G T A G T C A A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G