Information for 1-CAAGGCAAAGGBT (Motif 1)

A G T C C T G A G T C A A C T G A C T G G T A C G T C A G T C A G T C A A C T G A C T G A G T C A G C T
Reverse Opposite:
C T G A T A C G A G T C A G T C A C G T A C G T A C G T A C T G A G T C A G T C A C G T A G C T C T A G
p-value:1e-10
log p-value:-2.484e+01
Information Content per bp:1.818
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif7.14%
Number of Background Sequences with motif13.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets73.1 +/- 11.6bp
Average Position of motif in Background46.6 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.73
Offset:0
Orientation:forward strand
Alignment:CAAGGCAAAGGBT-
TAGGGCAAAGGTCA
 A G T C C T G A G T C A A C T G A C T G G T A C G T C A G T C A G T C A A C T G A C T G A G T C A G C T A C G T
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:2
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CAAGGCAAAGGBT-
GTAGGGCAAAGGTCA
 A C G T A G T C C T G A G T C A A C T G A C T G G T A C G T C A G T C A G T C A A C T G A C T G A G T C A G C T A C G T
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CAAGGCAAAGGBT-
TGGGGCAAAGGTCA
 A G T C C T G A G T C A A C T G A C T G G T A C G T C A G T C A G T C A A C T G A C T G A G T C A G C T A C G T
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:4
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CAAGGCAAAGGBT-
--ANGNAAAGGTCA
 A G T C C T G A G T C A A C T G A C T G G T A C G T C A G T C A G T C A A C T G A C T G A G T C A G C T A C G T
A C G T A C G T C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CAAGGCAAAGGBT
-AAAACAAAGG--
 A G T C C T G A G T C A A C T G A C T G G T A C G T C A G T C A G T C A A C T G A C T G A G T C A G C T
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T

NFATC2/MA0152.1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CAAGGCAAAGGBT
--TGGAAAA----
 A G T C C T G A G T C A A C T G A C T G G T A C G T C A G T C A G T C A A C T G A C T G A G T C A G C T
A C G T A C G T C G A T A C T G A C T G C G T A C G T A T C G A G C T A A C G T A C G T A C G T A C G T

NFAT5/MA0606.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CAAGGCAAAGGBT
NATGGAAAAN---
 A G T C C T G A G T C A A C T G A C T G G T A C G T C A G T C A G T C A A C T G A C T G A G T C A G C T
G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CAAGGCAAAGGBT
---AACAAAGG--
 A G T C C T G A G T C A A C T G A C T G G T A C G T C A G T C A G T C A A C T G A C T G A G T C A G C T
A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T

Nr2f6/MA0677.1/Jaspar

Match Rank:9
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CAAGGCAAAGGBT-
GAGGTCAAAGGTCA
 A G T C C T G A G T C A A C T G A C T G G T A C G T C A G T C A G T C A A C T G A C T G A G T C A G C T A C G T
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CAAGGCAAAGGBT
---RACAAWGG--
 A G T C C T G A G T C A A C T G A C T G G T A C G T C A G T C A G T C A A C T G A C T G A G T C A G C T
A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T