Information for 4-YCACTGTGAH (Motif 6)

A G C T A G T C C G T A A G T C C G A T A C T G A C G T T A C G T C G A G C A T
Reverse Opposite:
C G T A A G C T A G T C C G T A A G T C C G T A A C T G A C G T A C T G C T G A
p-value:1e-9
log p-value:-2.081e+01
Information Content per bp:1.795
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif10.28%
Number of Background Sequences with motif30.0
Percentage of Background Sequences with motif0.77%
Average Position of motif in Targets42.5 +/- 23.4bp
Average Position of motif in Background45.0 +/- 36.2bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0195.1_Zbtb3_2/Jaspar

Match Rank:1
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---YCACTGTGAH---
CAATCACTGGCAGAAT
 A C G T A C G T A C G T A G C T A G T C C G T A A G T C C G A T A C T G A C G T T A C G T C G A G C A T A C G T A C G T A C G T
A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:YCACTGTGAH
--GCTGTG--
 A G C T A G T C C G T A A G T C C G A T A C T G A C G T T A C G T C G A G C A T
A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T

Sox17/MA0078.1/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-YCACTGTGAH
CTCATTGTC--
 A C G T A G C T A G T C C G T A A G T C C G A T A C T G A C G T T A C G T C G A G C A T
G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--YCACTGTGAH---
GGTCANNGTGACCTN
 A C G T A C G T A G C T A G T C C G T A A G T C C G A T A C T G A C G T T A C G T C G A G C A T A C G T A C G T A C G T
C A T G C T A G C A G T A G T C C G T A A T G C T A C G T A C G G C A T T C A G G T C A G A T C G T A C G A C T A C G T

ESR1/MA0112.3/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----YCACTGTGAH---
CAGGTCACCGTGACCTT
 A C G T A C G T A C G T A C G T A G C T A G T C C G T A A G T C C G A T A C T G A C G T T A C G T C G A G C A T A C G T A C G T A C G T
T G A C T C G A A C T G A T C G A C G T A G T C T C G A A G T C A T G C A C T G A G C T C T A G G T C A A G T C G T A C A G C T G A C T

SOX10/MA0442.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:YCACTGTGAH
-CTTTGT---
 A G C T A G T C C G T A A G T C C G A T A C T G A C G T T A C G T C G A G C A T
A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----YCACTGTGAH--
TGTTCCCATTGTGTACT
 A C G T A C G T A C G T A C G T A C G T A G C T A G T C C G T A A G T C C G A T A C T G A C G T T A C G T C G A G C A T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

ZNF354C/MA0130.1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--YCACTGTGAH
ATCCAC------
 A C G T A C G T A G C T A G T C C G T A A G T C C G A T A C T G A C G T T A C G T C G A G C A T
T G C A G C A T A G T C A G T C C G T A A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:YCACTGTGAH
CCWTTGTYYB
 A G C T A G T C C G T A A G T C C G A T A C T G A C G T T A C G T C G A G C A T
A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:10
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----YCACTGTGAH
AGGVNCCTTTGT---
 A C G T A C G T A C G T A C G T A C G T A G C T A G T C C G T A A G T C C G A T A C T G A C G T T A C G T C G A G C A T
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T