Information for 1-BAGCCTTGACARG (Motif 1)

A G C T C G T A A C T G A G T C A G T C A C G T C A G T C T A G C G T A A G T C C G T A C T G A A C T G
Reverse Opposite:
A G T C G A C T C G A T A C T G A C G T A G T C G T C A C G T A A C T G A C T G G T A C C G A T T C G A
p-value:1e-33
log p-value:-7.639e+01
Information Content per bp:1.826
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif13.08%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets55.1 +/- 20.2bp
Average Position of motif in Background75.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MEIS3/MA0775.1/Jaspar

Match Rank:1
Score:0.71
Offset:5
Orientation:forward strand
Alignment:BAGCCTTGACARG
-----TTGACAGG
 A G C T C G T A A C T G A G T C A G T C A C G T C A G T C T A G C G T A A G T C C G T A C T G A A C T G
A C G T A C G T A C G T A C G T A C G T C G A T G C A T A T C G C T G A G A T C C T G A A C T G A T C G

MEIS2/MA0774.1/Jaspar

Match Rank:2
Score:0.70
Offset:5
Orientation:forward strand
Alignment:BAGCCTTGACARG
-----TTGACAGC
 A G C T C G T A A C T G A G T C A G T C A C G T C A G T C T A G C G T A A G T C C G T A C T G A A C T G
A C G T A C G T A C G T A C G T A C G T C G A T C A G T A C T G C G T A G T A C T G C A T A C G T A G C

MEIS1/MA0498.2/Jaspar

Match Rank:3
Score:0.66
Offset:5
Orientation:forward strand
Alignment:BAGCCTTGACARG
-----TTGACAG-
 A G C T C G T A A C T G A G T C A G T C A C G T C A G T C T A G C G T A A G T C C G T A C T G A A C T G
A C G T A C G T A C G T A C G T A C G T G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T

PH0105.1_Meis3/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:BAGCCTTGACARG-----
--GTATTGACAGGTNNTT
 A G C T C G T A A C T G A G T C A G T C A C G T C A G T C T A G C G T A A G T C C G T A C T G A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C A T G A C G T C G T A C G A T G A C T A C T G C G T A A G T C C T G A C T A G T A C G G A C T T G C A G C T A G A C T G C A T

PH0140.1_Pknox1/Jaspar

Match Rank:5
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:BAGCCTTGACARG-----
--GGATTGACAGGTCNTT
 A G C T C G T A A C T G A G T C A G T C A C G T C A G T C T A G C G T A A G T C C G T A C T G A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C T G A C T G C G T A C G A T A C G T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A C G T G A C T G C A T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:BAGCCTTGACARG
TGACCTTGAN---
 A G C T C G T A A C T G A G T C A G T C A C G T C A G T C T A G C G T A A G T C C G T A C T G A A C T G
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T

PH0104.1_Meis2/Jaspar

Match Rank:7
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:BAGCCTTGACARG-----
--NTATTGACAGGTNNTN
 A G C T C G T A A C T G A G T C A G T C A C G T C A G T C T A G C G T A A G T C C G T A C T G A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G C A G T G C T A C G A T G A C T C T A G C G T A A G T C C T G A A C T G A T C G G A C T T A G C A G C T G C A T C G A T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:BAGCCTTGACARG
TGACCTTGAV---
 A G C T C G T A A C T G A G T C A G T C A C G T C A G T C T A G C G T A A G T C C G T A C T G A A C T G
G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T A C G T

PH0102.1_Meis1/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:BAGCCTTGACARG-----
--NTATTGACAGCTNNTT
 A G C T C G T A A C T G A G T C A G T C A C G T C A G T C T A G C G T A A G T C C G T A C T G A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T A G A C G T C G T A C G A T A C G T A C T G C G T A A G T C C T G A A C T G A T G C G A C T T A G C A T C G G C A T G C A T

PH0141.1_Pknox2/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:BAGCCTTGACARG-----
--NNATTGACAGGTGCTT
 A G C T C G T A A C T G A G T C A G T C A C G T C A G T C T A G C G T A A G T C C G T A C T G A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T C G A C A G T C G T A C A G T A G C T C T A G C G T A A G T C C T G A C A T G A T C G A G C T T A C G A G T C G A C T C G A T