Information for 13-TGGAGGAATATTG (Motif 23)

A C G T A C T G C T A G C G T A A C T G A C T G G T C A C G T A G A C T T G C A C A G T A C G T A T C G
Reverse Opposite:
A T G C C G T A G C T A A C G T C T G A A C G T A C G T G T A C G T A C A C G T A G T C A G T C T G C A
p-value:1e-5
log p-value:-1.378e+01
Information Content per bp:1.843
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.0 +/- 23.3bp
Average Position of motif in Background33.3 +/- 11.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.67
Offset:3
Orientation:forward strand
Alignment:TGGAGGAATATTG
---ATGAATATTC
 A C G T A C T G C T A G C G T A A C T G A C T G G T C A C G T A G A C T T G C A C A G T A C G T A T C G
A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

Arid5a/MA0602.1/Jaspar

Match Rank:2
Score:0.62
Offset:4
Orientation:forward strand
Alignment:TGGAGGAATATTG-----
----CTAATATTGCTAAA
 A C G T A C T G C T A G C G T A A C T G A C T G G T C A C G T A G A C T T G C A C A G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:3
Score:0.62
Offset:4
Orientation:forward strand
Alignment:TGGAGGAATATTG-----
----CTAATATTGCTAAA
 A C G T A C T G C T A G C G T A A C T G A C T G G T C A C G T A G A C T T G C A C A G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TGGAGGAATATTG
---ATGMATATDC
 A C G T A C T G C T A G C G T A A C T G A C T G G T C A C G T A G A C T T G C A C A G T A C G T A T C G
A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.56
Offset:3
Orientation:forward strand
Alignment:TGGAGGAATATTG-----
---ATGAATATTCATGAG
 A C G T A C T G C T A G C G T A A C T G A C T G G T C A C G T A G A C T T G C A C A G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

ZNF354C/MA0130.1/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TGGAGGAATATTG
GTGGAT--------
 A C G T A C G T A C T G C T A G C G T A A C T G A C T G G T C A C G T A G A C T T G C A C A G T A C G T A T C G
A T C G A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0028.1_Hbp1_1/Jaspar

Match Rank:7
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----TGGAGGAATATTG
ACTATGAATGAATGAT-
 A C G T A C G T A C G T A C G T A C G T A C T G C T A G C G T A A C T G A C T G G T C A C G T A G A C T T G C A C A G T A C G T A T C G
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T A C G T

PH0129.1_Otx1/Jaspar

Match Rank:8
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----TGGAGGAATATTG
AGAGGGGATTAATTTAT
 A C G T A C G T A C G T A C G T A C G T A C T G C T A G C G T A A C T G A C T G G T C A C G T A G A C T T G C A C A G T A C G T A T C G
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

PH0130.1_Otx2/Jaspar

Match Rank:9
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----TGGAGGAATATTG
TGTAGGGATTAATTGTC
 A C G T A C G T A C G T A C G T A C G T A C T G C T A G C G T A A C T G A C T G G T C A C G T A G A C T T G C A C A G T A C G T A T C G
C A G T C T A G C G A T T C G A T C A G T C A G C A T G G T C A C G A T C G A T C G T A C T G A A G C T G A C T C T A G C A G T G A T C

PB0073.1_Sox7_1/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:TGGAGGAATATTG---------
TNNANNTCTATTGTTNTNNANN
 A C G T A C T G C T A G C G T A A C T G A C T G G T C A C G T A G A C T T G C A C A G T A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T T C A G C G T A C G T A C T G A C G A T C G A T A G T C G A C T C G T A A G C T C G A T T C A G C G A T G A C T G A T C G C A T C G A T G A C T T G C A C G A T C A G T