Information for 11-BGGGAGAGATCAC (Motif 21)

A G T C C T A G A C T G A T C G C G T A C T A G C G T A A T C G C G T A A G C T A G T C C G T A G T A C
Reverse Opposite:
A C T G A C G T C T A G C T G A A C G T A T G C A C G T A G T C A C G T A T G C A G T C A G T C T C A G
p-value:1e-5
log p-value:-1.331e+01
Information Content per bp:1.781
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif1.63%
Number of Background Sequences with motif16.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets42.7 +/- 26.5bp
Average Position of motif in Background49.1 +/- 25.1bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)2.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--BGGGAGAGATCAC
TAGGGCAAAGGTCA-
 A C G T A C G T A G T C C T A G A C T G A T C G C G T A C T A G C G T A A T C G C G T A A G C T A G T C C G T A G T A C
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T

PH0037.1_Hdx/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:BGGGAGAGATCAC----
AAGGCGAAATCATCGCA
 A G T C C T A G A C T G A T C G C G T A C T A G C G T A A T C G C G T A A G C T A G T C C G T A G T A C A C G T A C G T A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---BGGGAGAGATCAC
GTAGGGCAAAGGTCA-
 A C G T A C G T A C G T A G T C C T A G A C T G A T C G C G T A C T A G C G T A A T C G C G T A A G C T A G T C C G T A G T A C
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

Tcf7/MA0769.1/Jaspar

Match Rank:4
Score:0.61
Offset:4
Orientation:forward strand
Alignment:BGGGAGAGATCAC---
----AAAGATCAAAGG
 A G T C C T A G A C T G A T C G C G T A C T A G C G T A A T C G C G T A A G C T A G T C C G T A G T A C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--BGGGAGAGATCAC
TGGGGCAAAGGTCA-
 A C G T A C G T A G T C C T A G A C T G A T C G C G T A C T A G C G T A A T C G C G T A A G C T A G T C C G T A G T A C
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.60
Offset:5
Orientation:forward strand
Alignment:BGGGAGAGATCAC
-----AAGGTCAC
 A G T C C T A G A C T G A T C G C G T A C T A G C G T A A T C G C G T A A G C T A G T C C G T A G T A C
A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C

LEF1/MA0768.1/Jaspar

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:BGGGAGAGATCAC------
----AAAGATCAAAGGGTT
 A G T C C T A G A C T G A T C G C G T A C T A G C G T A A T C G C G T A A G C T A G T C C G T A G T A C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:BGGGAGAGATCAC
ANGNAAAGGTCA-
 A G T C C T A G A C T G A T C G C G T A C T A G C G T A A T C G C G T A A G C T A G T C C G T A G T A C
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T

PB0141.1_Isgf3g_2/Jaspar

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:BGGGAGAGATCAC--
-GCAAAACATTACTA
 A G T C C T A G A C T G A T C G C G T A C T A G C G T A A T C G C G T A A G C T A G T C C G T A G T A C A C G T A C G T
A C G T A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

PB0126.1_Gata5_2/Jaspar

Match Rank:10
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-BGGGAGAGATCAC---
GACAGAGATATCAGTGT
 A C G T A G T C C T A G A C T G A T C G C G T A C T A G C G T A A T C G C G T A A G C T A G T C C G T A G T A C A C G T A C G T A C G T
T C A G T G C A A G T C G T C A C T A G G T C A C A T G T C G A C A G T G T C A C A G T G A T C C G T A C T A G G A C T A C G T A C G T