Information for 1-GGCCCCCAAGAGGAYA (Motif 1)

A C T G A C T G A G T C A G T C A G T C A G T C A G T C G C T A C T G A C A T G C T G A A C T G A C T G G T C A A G T C T C G A
Reverse Opposite:
A G C T T C A G C A G T G T A C G T A C G A C T G T A C A G C T C G A T T C A G C T A G C T A G C T A G C T A G G T A C A G T C
p-value:1e-177
log p-value:-4.076e+02
Information Content per bp:1.693
Number of Target Sequences with motif79.0
Percentage of Target Sequences with motif32.24%
Number of Background Sequences with motif41.9
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets56.4 +/- 21.2bp
Average Position of motif in Background59.5 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GGCCCCCAAGAGGAYA-
RGGTCADNNAGAGGTCAV
 A C G T A C T G A C T G A G T C A G T C A G T C A G T C A G T C G C T A C T G A C A T G C T G A A C T G A C T G G T C A A G T C T C G A A C G T
C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

RARA::RXRA/MA0159.1/Jaspar

Match Rank:2
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGCCCCCAAGAGGAYA
AGGTCACGGAGAGGTCA
 A C G T A C T G A C T G A G T C A G T C A G T C A G T C A G T C G C T A C T G A C A T G C T G A A C T G A C T G G T C A A G T C T C G A
C T G A A C T G C A T G A C G T A T G C C T G A A G C T T A C G T C A G C T G A T A C G T C G A A C T G A C T G C A G T A T G C C G T A

PB0025.1_Glis2_1/Jaspar

Match Rank:3
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GGCCCCCAAGAGGAYA
TATCGACCCCCCACAG----
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C A G T C A G T C A G T C A G T C G C T A C T G A C A T G C T G A A C T G A C T G G T C A A G T C T C G A
G A C T G C T A G C A T T A G C A C T G T G C A A G T C A G T C G A T C G A T C G A T C G A T C T G C A A G T C C T G A C A T G A C G T A C G T A C G T A C G T

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GGCCCCCAAGAGGAYA
---TCCCCTGGGGAC-
 A C T G A C T G A G T C A G T C A G T C A G T C A G T C G C T A C T G A C A T G C T G A A C T G A C T G G T C A A G T C T C G A
A C G T A C G T A C G T A G C T A G T C A G T C G A T C G A T C C G A T C T A G C T A G C T A G T C A G T G C A G T A C A C G T

Znf423/MA0116.1/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GGCCCCCAAGAGGAYA
GGCACCCAGGGGTGC-
 A C T G A C T G A G T C A G T C A G T C A G T C A G T C G C T A C T G A C A T G C T G A A C T G A C T G G T C A A G T C T C G A
T C A G A T C G G T A C G T C A A G T C A G T C G A T C C G T A C T A G A C T G A C T G A C T G A C G T A C T G G T A C A C G T

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGCCCCCAAGAGGAYA
AGGTCAACTAAAGGTCA
 A C G T A C T G A C T G A G T C A G T C A G T C A G T C A G T C G C T A C T G A C A T G C T G A A C T G A C T G G T C A A G T C T C G A
T C G A A T C G C A T G A G C T A T G C C T G A G T C A T G A C A G C T C G T A C T G A C T G A T A C G A C T G A C G T A G T C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.53
Offset:-6
Orientation:forward strand
Alignment:------GGCCCCCAAGAGGAYA
CNNBRGCGCCCCCTGSTGGC--
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A G T C A G T C A G T C A G T C G C T A C T G A C A T G C T G A A C T G A C T G G T C A A G T C T C G A
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T

RARA(var.2)/MA0730.1/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGCCCCCAAGAGGAYA
AGGTCATGCAAAGGTCA
 A C G T A C T G A C T G A G T C A G T C A G T C A G T C A G T C G C T A C T G A C A T G C T G A A C T G A C T G G T C A A G T C T C G A
T C G A A C T G A C T G A C G T G A T C T G C A G A C T A T C G A G T C C G T A T C G A T C G A C A T G A C T G A C G T A T G C C T G A

CTCF/MA0139.1/Jaspar

Match Rank:9
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---GGCCCCCAAGAGGAYA
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C T G A C T G A G T C A G T C A G T C A G T C A G T C G C T A C T G A C A T G C T G A A C T G A C T G G T C A A G T C T C G A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

PB0052.1_Plagl1_1/Jaspar

Match Rank:10
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----GGCCCCCAAGAGGAYA
NNNGGGGCGCCCCCNN-----
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A G T C A G T C A G T C A G T C G C T A C T G A C A T G C T G A A C T G A C T G G T C A A G T C T C G A
A T G C A G C T T G C A C T A G C A T G C T A G A C T G A T G C A T C G T G A C G A T C G T A C G A T C G A T C C T G A T G C A A C G T A C G T A C G T A C G T A C G T