Information for 3-AATTGAATTA (Motif 3)

G T C A C T G A A G C T C G A T T A C G C T G A C G T A A C G T A G C T G C T A
Reverse Opposite:
C G A T T C G A C G T A A C G T A G C T A T G C C G T A C T G A G A C T A C G T
p-value:1e-14
log p-value:-3.408e+01
Information Content per bp:1.840
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.38%
Number of Background Sequences with motif94.7
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets45.0 +/- 26.0bp
Average Position of motif in Background50.8 +/- 35.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Phox2b/MA0681.1/Jaspar

Match Rank:1
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-AATTGAATTA
TAATTAAATTA
 A C G T G T C A C T G A A G C T C G A T T A C G C T G A C G T A A C G T A G C T G C T A
G C A T C G T A C T G A A G C T A G C T C T G A T C G A C T G A A G C T G A C T C G T A

PHOX2A/MA0713.1/Jaspar

Match Rank:2
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-AATTGAATTA
TAATTAAATTA
 A C G T G T C A C T G A A G C T C G A T T A C G C T G A C G T A A C G T A G C T G C T A
G C A T C G T A T C G A A G C T A G C T C T G A T C G A C T G A G A C T G A C T C G T A

PROP1/MA0715.1/Jaspar

Match Rank:3
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-AATTGAATTA
TAATTAAATTA
 A C G T G T C A C T G A A G C T C G A T T A C G C T G A C G T A A C G T A G C T G C T A
G C A T C T G A C G T A G A C T C A G T G C T A C T G A C G T A A G C T C G A T C G T A

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:4
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--AATTGAATTA
NTAATBNAATTA
 A C G T A C G T G T C A C T G A A G C T C G A T T A C G C T G A C G T A A C G T A G C T G C T A
G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--AATTGAATTA
YTAATYNRATTA
 A C G T A C G T G T C A C T G A A G C T C G A T T A C G C T G A C G T A A C G T A G C T G C T A
G A T C G C A T C T G A C G T A A G C T A G C T C G T A T C G A C T G A A C G T G C A T C G T A

PB0068.1_Sox1_1/Jaspar

Match Rank:6
Score:0.83
Offset:-3
Orientation:reverse strand
Alignment:---AATTGAATTA---
NNNTATTGAATTGNNN
 A C G T A C G T A C G T G T C A C T G A A G C T C G A T T A C G C T G A C G T A A C G T A G C T G C T A A C G T A C G T A C G T
T G C A G C T A C A G T G C A T C G T A C G A T C G A T A T C G G C T A C G T A C G A T C G A T C T A G G T C A G C A T C G A T

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:7
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--AATTGAATTA
GTAATCDGATTA
 A C G T A C G T G T C A C T G A A G C T C G A T T A C G C T G A C G T A A C G T A G C T G C T A
C A T G C G A T T C G A C T G A G C A T A G T C C A T G T C A G C T G A A C G T G A C T C G T A

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:8
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-AATTGAATTA
TAATTGATTA-
 A C G T G T C A C T G A A G C T C G A T T A C G C T G A C G T A A C G T A G C T G C T A
C G A T T C G A C G T A A G C T A C G T C T A G C T G A A C G T A G C T G C T A A C G T

DUX4/MA0468.1/Jaspar

Match Rank:9
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AATTGAATTA
TGATTAAATTA
 A C G T G T C A C T G A A G C T C G A T T A C G C T G A C G T A A C G T A G C T G C T A
C G A T C T A G C G T A A C G T C A G T T C G A T C G A C T G A A C G T A G C T C G T A

PB0005.1_Bbx_1/Jaspar

Match Rank:10
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----AATTGAATTA
NANTTCATTGAATTA
 A C G T A C G T A C G T A C G T A C G T G T C A C T G A A G C T C G A T T A C G C T G A C G T A A C G T A G C T G C T A
G A T C C G T A T A G C C G A T C G A T T G A C G C T A G C A T C G A T A C T G C G T A G C T A G A C T C G A T C G T A