Information for 9-CGCTGACCTT (Motif 13)

A G T C C T A G A G T C A C G T A T C G C G T A A G T C A T G C A C G T C G A T
Reverse Opposite:
G C T A C G T A A T C G A C T G A C G T A T G C C G T A A C T G G A T C T C A G
p-value:1e-10
log p-value:-2.423e+01
Information Content per bp:1.846
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif2.06%
Number of Background Sequences with motif122.6
Percentage of Background Sequences with motif0.26%
Average Position of motif in Targets56.1 +/- 26.1bp
Average Position of motif in Background51.2 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.82
Offset:2
Orientation:forward strand
Alignment:CGCTGACCTT--
--NTGACCTTGA
 A G T C C T A G A G T C A C G T A T C G C G T A A G T C A T G C A C G T C G A T A C G T A C G T
A C G T A C G T C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:CGCTGACCTT--
--CTGACCTTTG
 A G T C C T A G A G T C A C G T A T C G C G T A A G T C A T G C A C G T C G A T A C G T A C G T
A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.80
Offset:3
Orientation:reverse strand
Alignment:CGCTGACCTT-
---TGACCTYA
 A G T C C T A G A G T C A C G T A T C G C G T A A G T C A T G C A C G T C G A T A C G T
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A

NR4A2/MA0160.1/Jaspar

Match Rank:4
Score:0.80
Offset:2
Orientation:reverse strand
Alignment:CGCTGACCTT
--GTGACCTT
 A G T C C T A G A G T C A C G T A T C G C G T A A G T C A T G C A C G T C G A T
A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.80
Offset:3
Orientation:reverse strand
Alignment:CGCTGACCTT---
---TGACCTTGAT
 A G T C C T A G A G T C A C G T A T C G C G T A A G T C A T G C A C G T C G A T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

Esrrg/MA0643.1/Jaspar

Match Rank:6
Score:0.79
Offset:2
Orientation:reverse strand
Alignment:CGCTGACCTT--
--ATGACCTTGA
 A G T C C T A G A G T C A C G T A T C G C G T A A G T C A T G C A C G T C G A T A C G T A C G T
A C G T A C G T C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:7
Score:0.79
Offset:3
Orientation:forward strand
Alignment:CGCTGACCTT-----
---TGACCTTTNCNT
 A G T C C T A G A G T C A C G T A T C G C G T A A G T C A T G C A C G T C G A T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C G T A A G T C G T A C A C G T A C G T A C G T G T C A G T A C T G A C G A C T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:CGCTGACCTT
---TGACCT-
 A G T C C T A G A G T C A C G T A T C G C G T A A G T C A T G C A C G T C G A T
A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:9
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-CGCTGACCTT-----
NNNGTGACCTTTGNNN
 A C G T A G T C C T A G A G T C A C G T A T C G C G T A A G T C A T G C A C G T C G A T A C G T A C G T A C G T A C G T A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:10
Score:0.76
Offset:3
Orientation:reverse strand
Alignment:CGCTGACCTT---
---TGACCTTGAV
 A G T C C T A G A G T C A C G T A T C G C G T A A G T C A T G C A C G T C G A T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A