Information for 3-TTAATTAACCTTY (Motif 4)

A C G T C G A T C G T A C T G A C G A T A C G T C G T A C G T A A T G C G T A C A G C T A G C T G A T C
Reverse Opposite:
C T A G C T G A C T G A A C T G T A C G C G A T A C G T C G T A C G T A G A C T A C G T C G T A C G T A
p-value:1e-14
log p-value:-3.302e+01
Information Content per bp:1.791
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.8 +/- 21.4bp
Average Position of motif in Background22.8 +/- 15.2bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0153.1_Prop1/Jaspar

Match Rank:1
Score:0.82
Offset:-4
Orientation:forward strand
Alignment:----TTAATTAACCTTY
CGAATTAATTAAGAAAC
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C T G A C G A T A C G T C G T A C G T A A T G C G T A C A G C T A G C T G A T C
T G A C T C A G T G C A T C G A G A C T G A C T C G T A C G T A G A C T A C G T C T G A C T G A A C T G C G T A C G T A C T G A G A T C

PB0001.1_Arid3a_1/Jaspar

Match Rank:2
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----TTAATTAACCTTY
GGGTTTAATTAAAATTC
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C T G A C G A T A C G T C G T A C G T A A T G C G T A C A G C T A G C T G A T C
T A C G A C T G A C T G G C A T G A C T A G C T C T G A C G T A C G A T G A C T T C G A C T G A C G T A G T C A G A C T G C A T G A T C

PH0011.1_Alx1_2/Jaspar

Match Rank:3
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----TTAATTAACCTTY
CGCATTAATTAATTGGC
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C T G A C G A T A C G T C G T A C G T A A T G C G T A C A G C T A G C T G A T C
A G T C T C A G G T A C C T G A G A C T G A C T C T G A C G T A G A C T A G C T C T G A C T G A A G C T A G C T C T A G C T A G T G A C

PH0128.1_Otp/Jaspar

Match Rank:4
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----TTAATTAACCTTY
CNNATTAATTAATTNNN
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C T G A C G A T A C G T C G T A C G T A A T G C G T A C A G C T A G C T G A T C
G T A C G T A C G T C A T C G A G A C T G A C T T C G A C T G A A G C T A C G T C T G A C T G A A G C T C G A T C T G A A G T C A C T G

PH0069.1_Hoxc4/Jaspar

Match Rank:5
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----TTAATTAACCTTY
CGAATTAATTAACAATA
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C T G A C G A T A C G T C G T A C G T A A T G C G T A C A G C T A G C T G A T C
T G A C T C A G G T C A C T G A G C A T G A C T G T C A C G T A C G A T A C G T C T G A C G T A A G T C G C T A T G C A G C A T G T C A

PH0101.1_Lmx1b/Jaspar

Match Rank:6
Score:0.80
Offset:-4
Orientation:reverse strand
Alignment:----TTAATTAACCTTY
NNAATTAATTAAAAANN
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C T G A C G A T A C G T C G T A C G T A A T G C G T A C A G C T A G C T G A T C
T G A C C T G A G C T A C G T A A G C T G A C T G C T A C G T A G C A T C G A T C G T A C T G A C G T A G C T A G C T A G A T C A G C T

LMX1A/MA0702.1/Jaspar

Match Rank:7
Score:0.79
Offset:0
Orientation:reverse strand
Alignment:TTAATTAACCTTY
TTAATTAA-----
 A C G T C G A T C G T A C T G A C G A T A C G T C G T A C G T A A T G C G T A C A G C T A G C T G A T C
A G C T G A C T G C T A C G T A C G A T G A C T C T G A T C G A A C G T A C G T A C G T A C G T A C G T

PH0173.1_Uncx/Jaspar

Match Rank:8
Score:0.79
Offset:-4
Orientation:reverse strand
Alignment:----TTAATTAACCTTY
CNCNTTAATTAATTANN
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C T G A C G A T A C G T C G T A C G T A A T G C G T A C A G C T A G C T G A T C
T G A C A T C G A G T C T C A G A G C T G A C T T C G A C G T A G A C T A C G T C T G A C T G A A C G T A G C T C G T A A G C T A C T G

PH0100.1_Lmx1a/Jaspar

Match Rank:9
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----TTAATTAACCTTY
CGAATTAATTAAAAACC
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C T G A C G A T A C G T C G T A C G T A A T G C G T A C A G C T A G C T G A T C
T A G C T A C G G C T A C G T A G A C T G A C T C G T A C G T A C G A T C G A T C T G A C T G A C G T A G C T A G C T A G A T C A G T C

Alx4/MA0853.1/Jaspar

Match Rank:10
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----TTAATTAACCTTY
CGCATTAATTAATTACC
 A C G T A C G T A C G T A C G T A C G T C G A T C G T A C T G A C G A T A C G T C G T A C G T A A T G C G T A C A G C T A G C T G A T C
T G A C A T C G G A T C C T G A G A C T G A C T T C G A C G T A G A C T A C G T C T G A C T G A A G C T G C A T G T C A A T G C A G T C