Information for 10-CGTGCGGCTC (Motif 19)

A G T C A T C G C G A T A C T G T G A C C T A G A C T G A G T C C G A T A G T C
Reverse Opposite:
C T A G G C T A C T A G T G A C A G T C A C T G T G A C C G T A A T G C A C T G
p-value:1e-10
log p-value:-2.356e+01
Information Content per bp:1.828
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.96%
Number of Background Sequences with motif113.7
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets45.1 +/- 24.6bp
Average Position of motif in Background52.2 +/- 29.2bp
Strand Bias (log2 ratio + to - strand density)2.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CGTGCGGCTC
GGACGTGC-----
 A C G T A C G T A C G T A G T C A T C G C G A T A C T G T G A C C T A G A C T G A G T C C G A T A G T C
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CGTGCGGCTC
RTACGTGC-----
 A C G T A C G T A C G T A G T C A T C G C G A T A C T G T G A C C T A G A C T G A G T C C G A T A G T C
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T A C G T A C G T A C G T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CGTGCGGCTC
TACGTGCV----
 A C G T A C G T A G T C A T C G C G A T A C T G T G A C C T A G A C T G A G T C C G A T A G T C
A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T A C G T A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:4
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CGTGCGGCTC
NNCGCGTGNN----
 A C G T A C G T A C G T A C G T A G T C A T C G C G A T A C T G T G A C C T A G A C T G A G T C C G A T A G T C
C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C A C G T A C G T A C G T A C G T

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:5
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CGTGCGGCTC
GGGTACGTGC-----
 A C G T A C G T A C G T A C G T A C G T A G T C A T C G C G A T A C T G T G A C C T A G A C T G A G T C C G A T A G T C
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C A C G T A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:6
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CGTGCGGCTC
TTGCGTGCVA---
 A C G T A C G T A C G T A G T C A T C G C G A T A C T G T G A C C T A G A C T G A G T C C G A T A G T C
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:7
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CGTGCGGCTC
TGCGTG------
 A C G T A C G T A G T C A T C G C G A T A C T G T G A C C T A G A C T G A G T C C G A T A G T C
G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T A C G T A C G T

POL001.1_MTE/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CGTGCGGCTC----
NCGACCGCTCCGCTCGAAA
 A C G T A C G T A C G T A C G T A C G T A G T C A T C G C G A T A C T G T G A C C T A G A C T G A G T C C G A T A G T C A C G T A C G T A C G T A C G T
T C A G A T G C C T A G C G T A A T G C A G T C A C T G G A C T A C G T A T G C A T G C A C T G A G T C A C G T A G T C A C T G C T G A C T G A T C G A

TFAP2A/MA0003.3/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CGTGCGGCTC
NGCCTGAGGCN-
 A C G T A C G T A G T C A T C G C G A T A C T G T G A C C T A G A C T G A G T C C G A T A G T C
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A T G A C G T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CGTGCGGCTC
TGCCTGAGGCN-
 A C G T A C G T A G T C A T C G C G A T A C T G T G A C C T A G A C T G A G T C C G A T A G T C
G C A T A T C G A T G C A G T C A C G T A T C G T C G A T C A G A T C G A T G C C A G T A C G T