Information for 3-AGGGCAAAGGTTA (Motif 4)

C G T A C A T G A C T G A C T G G A T C T C G A C G T A C T G A A T C G C T A G A C G T G A C T G T C A
Reverse Opposite:
C A G T C G T A C G T A A G T C A T G C G A C T A C G T A C G T C A T G A G T C A G T C G T A C A C G T
p-value:1e-17
log p-value:-3.937e+01
Information Content per bp:1.790
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.53%
Number of Background Sequences with motif16.1
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets43.7 +/- 21.6bp
Average Position of motif in Background59.0 +/- 25.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:1
Score:0.83
Offset:-1
Orientation:forward strand
Alignment:-AGGGCAAAGGTTA
TAGGGCAAAGGTCA
 A C G T C G T A C A T G A C T G A C T G G A T C T C G A C G T A C T G A A T C G C T A G A C G T G A C T G T C A
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:2
Score:0.79
Offset:-2
Orientation:forward strand
Alignment:--AGGGCAAAGGTTA
GTAGGGCAAAGGTCA
 A C G T A C G T C G T A C A T G A C T G A C T G G A T C T C G A C G T A C T G A A T C G C T A G A C G T G A C T G T C A
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:3
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-AGGGCAAAGGTTA
TGGGGCAAAGGTCA
 A C G T C G T A C A T G A C T G A C T G G A T C T C G A C G T A C T G A A T C G C T A G A C G T G A C T G T C A
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A

Nr2f6/MA0677.1/Jaspar

Match Rank:4
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-AGGGCAAAGGTTA
GAGGTCAAAGGTCA
 A C G T C G T A C A T G A C T G A C T G G A T C T C G A C G T A C T G A A T C G C T A G A C G T G A C T G T C A
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:5
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-AGGGCAAAGGTTA
GAGGTCAAAGGTCA
 A C G T C G T A C A T G A C T G A C T G G A T C T C G A C G T A C T G A A T C G C T A G A C G T G A C T G T C A
T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:6
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:AGGGCAAAGGTTA
-ANGNAAAGGTCA
 C G T A C A T G A C T G A C T G G A T C T C G A C G T A C T G A A T C G C T A G A C G T G A C T G T C A
A C G T C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A

NR1H2::RXRA/MA0115.1/Jaspar

Match Rank:7
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--AGGGCAAAGGTTA--
AAAGGTCAAAGGTCAAC
 A C G T A C G T C G T A C A T G A C T G A C T G G A T C T C G A C G T A C T G A A T C G C T A G A C G T G A C T G T C A A C G T A C G T
G T C A C T G A C T G A A C T G A C T G A C G T A G T C C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A C G T A A T G C

Rxra/MA0512.2/Jaspar

Match Rank:8
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AGGGCAAAGGTTA
GGGGTCAAAGGTCA
 A C G T C G T A C A T G A C T G A C T G G A T C T C G A C G T A C T G A A T C G C T A G A C G T G A C T G T C A
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

RXRG/MA0856.1/Jaspar

Match Rank:9
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-AGGGCAAAGGTTA
GGGGTCAAAGGTCA
 A C G T C G T A C A T G A C T G A C T G G A T C T C G A C G T A C T G A A T C G C T A G A C G T G A C T G T C A
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

NR2C2/MA0504.1/Jaspar

Match Rank:10
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AGGGCAAAGGTTA
AGGGGTCAGAGGTCA
 A C G T A C G T C G T A C A T G A C T G A C T G G A T C T C G A C G T A C T G A A T C G C T A G A C G T G A C T G T C A
T G C A T C A G T C A G A C T G C A T G C A G T A T G C C T G A C T A G C T G A C T A G C A T G A C G T A G T C C T G A