Information for 9-AGCCAATCGC (Motif 9)

C G T A A C T G A G T C A G T C C G T A C G T A A C G T A G T C A C T G A G T C
Reverse Opposite:
C T A G A G T C A C T G C G T A C G A T A C G T A C T G A C T G A G T C A C G T
p-value:1e-8
log p-value:-2.023e+01
Information Content per bp:1.938
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif11.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.4 +/- 24.2bp
Average Position of motif in Background43.6 +/- 24.8bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.79
Offset:-3
Orientation:forward strand
Alignment:---AGCCAATCGC
ACTAGCCAATCA-
 A C G T A C G T A C G T C G T A A C T G A G T C A G T C C G T A C G T A A C G T A G T C A C T G A G T C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.79
Offset:0
Orientation:forward strand
Alignment:AGCCAATCGC
AGCCAATCGG
 C G T A A C T G A G T C A G T C C G T A C G T A A C G T A G T C A C T G A G T C
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----AGCCAATCGC
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A G T C A G T C C G T A C G T A A C G T A G T C A C T G A G T C
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AGCCAATCGC
TGCCAA----
 C G T A A C T G A G T C A G T C C G T A C G T A A C G T A G T C A C T G A G T C
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--AGCCAATCGC
CGTGCCAAG---
 A C G T A C G T C G T A A C T G A G T C A G T C C G T A C G T A A C G T A G T C A C T G A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGCCAATCGC
BCAGACWA----
 A C G T A C G T C G T A A C T G A G T C A G T C C G T A C G T A A C G T A G T C A C T G A G T C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-AGCCAATCGC
CAGCC------
 A C G T C G T A A C T G A G T C A G T C C G T A C G T A A C G T A G T C A C T G A G T C
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGCCAATCGC--
--CAAATCACTG
 C G T A A C T G A G T C A G T C C G T A C G T A A C G T A G T C A C T G A G T C A C G T A C G T
A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

NFYA/MA0060.2/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGCCAATCGC------
TGGACCAATCAGCACTCT
 A C G T A C G T C G T A A C T G A G T C A G T C C G T A C G T A A C G T A G T C A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

PH0139.1_Pitx3/Jaspar

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---AGCCAATCGC---
GNNAGCTAATCCCCCN
 A C G T A C G T A C G T C G T A A C T G A G T C A G T C C G T A C G T A A C G T A G T C A C T G A G T C A C G T A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T