Information for 10-CTGCTAWVWM (Motif 10)

G A T C C G A T T A C G A T G C G A C T C G T A C G A T T A C G G C A T G T A C
Reverse Opposite:
C A T G C G T A A T G C G C T A G C A T C T G A T A C G A T G C G C T A C T A G
p-value:1e-9
log p-value:-2.138e+01
Information Content per bp:1.507
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.70%
Number of Background Sequences with motif85.8
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets40.1 +/- 26.4bp
Average Position of motif in Background52.5 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTAWVWM-
NCCGTTGCTANGNGN
 A C G T A C G T A C G T A C G T G A T C C G A T T A C G A T G C G A C T C G T A C G A T T A C G G C A T G T A C A C G T
G A C T A G T C A T G C C T A G A C G T G A C T C T A G G A T C A G C T C T G A C A G T T A C G A T G C T C A G T C A G

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTAWVWM-
NNCGTTGCTATGGNN
 A C G T A C G T A C G T A C G T G A T C C G A T T A C G A T G C G A C T C G T A C G A T T A C G G C A T G T A C A C G T
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CTGCTAWVWM
TTGCCAAG--
 G A T C C G A T T A C G A T G C G A C T C G T A C G A T T A C G G C A T G T A C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CTGCTAWVWM
GGTGCCAAGT-
 A C G T G A T C C G A T T A C G A T G C G A C T C G T A C G A T T A C G G C A T G T A C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.66
Offset:-8
Orientation:reverse strand
Alignment:--------CTGCTAWVWM-----
NTNNNNNGTTGCTANGGNNCANA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G A T T A C G A T G C G A C T C G T A C G A T T A C G G C A T G T A C A C G T A C G T A C G T A C G T A C G T
C G A T C G A T C G T A C G T A G C A T A G T C A T C G C T A G A C G T G A C T C T A G A G T C A G C T C T G A C T G A T A C G A C T G C T A G C A G T T A G C T C G A G T A C C T G A

PB0126.1_Gata5_2/Jaspar

Match Rank:6
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---CTGCTAWVWM----
NNNCTGATATCTCNNNN
 A C G T A C G T A C G T G A T C C G A T T A C G A T G C G A C T C G T A C G A T T A C G G C A T G T A C A C G T A C G T A C G T A C G T
T G C A T G A C C T G A G A T C G C A T C T A G G T C A C A G T G T C A A C G T G T A C C A G T G A T C C A G T T A C G A C G T A G T C

PB0022.1_Gata5_1/Jaspar

Match Rank:7
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----CTGCTAWVWM---
TAAACTGATAAGAAGAT
 A C G T A C G T A C G T A C G T G A T C C G A T T A C G A T G C G A C T C G T A C G A T T A C G G C A T G T A C A C G T A C G T A C G T
G C A T C G T A C G T A C T G A A G T C G C A T A C T G C G T A C G A T G C T A C G T A T A C G T C G A T C G A C A T G C G T A C A G T

Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTGCTAWVWM
AAGGTGTKAA---
 A C G T A C G T A C G T G A T C C G A T T A C G A T G C G A C T C G T A C G A T T A C G G C A T G T A C
C T G A C T G A C A T G A T C G A G C T A T C G G A C T C A T G C T G A G T C A A C G T A C G T A C G T

PB0119.1_Foxa2_2/Jaspar

Match Rank:9
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTAWVWM-
NCNTTTGTTATTTNN
 A C G T A C G T A C G T A C G T G A T C C G A T T A C G A T G C G A C T C G T A C G A T T A C G G C A T G T A C A C G T
A T G C A T G C A T C G A G C T C A G T C A G T C T A G G C A T G A C T T C G A C A G T G A C T G C A T A G C T A G C T

PB0155.1_Osr2_2/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CTGCTAWVWM----
ACTTGCTACCTACACC
 A C G T A C G T G A T C C G A T T A C G A T G C G A C T C G T A C G A T T A C G G C A T G T A C A C G T A C G T A C G T A C G T
C T G A G A T C G A C T G A C T T A C G A G T C G A C T G C T A G T A C G A T C G C A T T C G A G T A C C G T A A G C T T G A C