Information for 7-GAGAGCAATGCTT (Motif 5)

A T C G C G T A A C T G C G T A C T A G T A G C C G T A C G T A A C G T A T C G A G T C A C G T C G A T
Reverse Opposite:
C G T A G T C A A C T G A T G C C G T A C G A T A C G T A C T G A G T C A C G T A G T C C G A T A T G C
p-value:1e-16
log p-value:-3.701e+01
Information Content per bp:1.839
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.09%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.0 +/- 31.5bp
Average Position of motif in Background57.5 +/- 20.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0062.1_Sox12_1/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GAGAGCAATGCTT
NTTNAGAACAATTA--
 A C G T A C G T A C G T A T C G C G T A A C T G C G T A C T A G T A G C C G T A C G T A A C G T A T C G A G T C A C G T C G A T
C A T G C G A T C G A T C A G T C G T A A C T G C T G A G C T A A G T C G C T A C G T A G C A T C G A T C T G A A C G T A C G T

PB0067.1_Sox18_1/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GAGAGCAATGCTT
NNTNANAACAATTNNA
 A C G T A C G T A C G T A T C G C G T A A C T G C G T A C T A G T A G C C G T A C G T A A C G T A T C G A G T C A C G T C G A T
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A

PB0099.1_Zfp691_1/Jaspar

Match Rank:3
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---GAGAGCAATGCTT-
NNNNTGAGCACTGTNNG
 A C G T A C G T A C G T A T C G C G T A A C T G C G T A C T A G T A G C C G T A C G T A A C G T A T C G A G T C A C G T C G A T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

PB0063.1_Sox13_1/Jaspar

Match Rank:4
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAGAGCAATGCTT-
TTAAGAACAATAAATT
 A C G T A C G T A T C G C G T A A C T G C G T A C T A G T A G C C G T A C G T A A C G T A T C G A G T C A C G T C G A T A C G T
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

PB0072.1_Sox5_1/Jaspar

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAGAGCAATGCTT-
TTTAGAACAATAAAAT
 A C G T A C G T A T C G C G T A A C T G C G T A C T A G T A G C C G T A C G T A A C G T A T C G A G T C A C G T C G A T A C G T
C G A T G C A T C A G T C T G A C T A G T C G A C G T A A G T C C G T A C G T A G C A T C G T A C T G A C G T A G C T A C G A T

Sox6/MA0515.1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GAGAGCAATGCTT
-AAAACAATGG--
 A T C G C G T A A C T G C G T A C T A G T A G C C G T A C G T A A C G T A T C G A G T C A C G T C G A T
A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GAGAGCAATGCTT
-VRAACAATGG--
 A T C G C G T A A C T G C G T A C T A G T A G C C G T A C G T A A C G T A T C G A G T C A C G T C G A T
A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T

Sox5/MA0087.1/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GAGAGCAATGCTT
--NAACAAT----
 A T C G C G T A A C T G C G T A C T A G T A G C C G T A C G T A A C G T A T C G A G T C A C G T C G A T
A C G T A C G T G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T

SOX9/MA0077.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GAGAGCAATGCTT
--GAACAATGG--
 A T C G C G T A A C T G C G T A C T A G T A G C C G T A C G T A A C G T A T C G A G T C A C G T C G A T
A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G A C G T A C G T

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GAGAGCAATGCTT
---AACAAT----
 A T C G C G T A A C T G C G T A C T A G T A G C C G T A C G T A A C G T A T C G A G T C A C G T C G A T
A C G T A C G T A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T A C G T