Information for 3-TCATCACTCA (Motif 10)

A C G T A G T C C G T A A C G T A G T C C G T A A G T C C G A T A G T C G T C A
Reverse Opposite:
A C G T A C T G C G T A A C T G A C G T A C T G G T C A A C G T A C T G T G C A
p-value:1e-8
log p-value:-2.009e+01
Information Content per bp:1.856
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif36.6
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets31.5 +/- 22.6bp
Average Position of motif in Background56.1 +/- 21.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:1
Score:0.83
Offset:0
Orientation:forward strand
Alignment:TCATCACTCA
TCATCAATCA
 A C G T A G T C C G T A A C G T A G T C C G T A A G T C C G A T A G T C G T C A
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

PBX1/MA0070.1/Jaspar

Match Rank:2
Score:0.82
Offset:0
Orientation:forward strand
Alignment:TCATCACTCA--
CCATCAATCAAA
 A C G T A G T C C G T A A C G T A G T C C G T A A G T C C G A T A G T C G T C A A C G T A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:3
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-TCATCACTCA-
GYCATCMATCAT
 A C G T A C G T A G T C C G T A A C G T A G T C C G T A A G T C C G A T A G T C G T C A A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:4
Score:0.76
Offset:-2
Orientation:reverse strand
Alignment:--TCATCACTCA
RGCCATYAATCA
 A C G T A C G T A C G T A G T C C G T A A C G T A G T C C G T A A G T C C G A T A G T C G T C A
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-TCATCACTCA
GCCATAAATCA
 A C G T A C G T A G T C C G T A A C G T A G T C C G T A A G T C C G A T A G T C G T C A
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

PB0144.1_Lef1_2/Jaspar

Match Rank:6
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--TCATCACTCA----
GAAGATCAATCACTTA
 A C G T A C G T A C G T A G T C C G T A A C G T A G T C C G T A A G T C C G A T A G T C G T C A A C G T A C G T A C G T A C G T
T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

PH0134.1_Pbx1/Jaspar

Match Rank:7
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----TCATCACTCA---
TCACCCATCAATAAACA
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A G T C C G T A A G T C C G A T A G T C G T C A A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

NFE2/MA0841.1/Jaspar

Match Rank:8
Score:0.70
Offset:1
Orientation:forward strand
Alignment:TCATCACTCA--
-CATGACTCATC
 A C G T A G T C C G T A A C G T A G T C C G T A A G T C C G A T A G T C G T C A A C G T A C G T
A C G T T G A C T C G A G A C T A C T G G T C A T A G C A G C T G A T C T G C A A G C T A T G C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:9
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TCATCACTCA
GGCCATAAATCA
 A C G T A C G T A C G T A G T C C G T A A C G T A G T C C G T A A G T C C G A T A G T C G T C A
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:10
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TCATCACTCA----
GAAGATCAATCACTAA
 A C G T A C G T A C G T A G T C C G T A A C G T A G T C C G T A A G T C C G A T A G T C G T C A A C G T A C G T A C G T A C G T
T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A