p-value: | 1e-13 |
log p-value: | -3.154e+01 |
Information Content per bp: | 1.793 |
Number of Target Sequences with motif | 6.0 |
Percentage of Target Sequences with motif | 0.80% |
Number of Background Sequences with motif | 1.9 |
Percentage of Background Sequences with motif | 0.00% |
Average Position of motif in Targets | 51.3 +/- 32.1bp |
Average Position of motif in Background | 63.2 +/- 8.3bp |
Strand Bias (log2 ratio + to - strand density) | 1.0 |
Multiplicity (# of sites on avg that occur together) | 1.00 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer
Match Rank: | 1 |
Score: | 0.57 |
Offset: | 1 |
Orientation: | forward strand |
Alignment: | ACGGTTCAGGGCAHGG -AGGTCAAGGTCA--- |
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RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer
Match Rank: | 2 |
Score: | 0.55 |
Offset: | 1 |
Orientation: | forward strand |
Alignment: | ACGGTTCAGGGCAHGG -AGGTCAAGGTCA--- |
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RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer
Match Rank: | 3 |
Score: | 0.55 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -ACGGTTCAGGGCAHGG TAGGGCAAAGGTCA--- |
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THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer
Match Rank: | 4 |
Score: | 0.55 |
Offset: | 5 |
Orientation: | forward strand |
Alignment: | ACGGTTCAGGGCAHGG -----TRAGGTCA--- |
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RARA::RXRA/MA0159.1/Jaspar
Match Rank: | 5 |
Score: | 0.54 |
Offset: | 2 |
Orientation: | forward strand |
Alignment: | ACGGTTCAGGGCAHGG--- --AGGTCACGGAGAGGTCA |
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PB0057.1_Rxra_1/Jaspar
Match Rank: | 6 |
Score: | 0.53 |
Offset: | -4 |
Orientation: | reverse strand |
Alignment: | ----ACGGTTCAGGGCAHGG NTNNNGGGGTCANGNNN--- |
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PB0153.1_Nr2f2_2/Jaspar
Match Rank: | 7 |
Score: | 0.53 |
Offset: | -4 |
Orientation: | forward strand |
Alignment: | ----ACGGTTCAGGGCAHGG CGCGCCGGGTCACGTA---- |
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AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer
Match Rank: | 8 |
Score: | 0.52 |
Offset: | -1 |
Orientation: | forward strand |
Alignment: | -ACGGTTCAGGGCAHGG CCAGGAACAG------- |
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PB0157.1_Rara_2/Jaspar
Match Rank: | 9 |
Score: | 0.52 |
Offset: | -4 |
Orientation: | forward strand |
Alignment: | ----ACGGTTCAGGGCAHGG AGAGCGGGGTCAAGTA---- |
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STAT1/MA0137.3/Jaspar
Match Rank: | 10 |
Score: | 0.51 |
Offset: | 3 |
Orientation: | forward strand |
Alignment: | ACGGTTCAGGGCAHGG ---TTTCCAGGAAA-- |
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