Information for 6-TGCCAAAGCTTGT (Motif 7)

A C G T C A T G G T A C A G T C C G T A C G T A C G T A A C T G A T G C C G A T C A G T C T A G C G A T
Reverse Opposite:
C G T A A G T C G T C A C G T A A T C G A G T C C G A T C G A T A C G T A C T G A C T G G T A C G T C A
p-value:1e-11
log p-value:-2.740e+01
Information Content per bp:1.778
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif8.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.9 +/- 17.9bp
Average Position of motif in Background47.0 +/- 15.9bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--TGCCAAAGCTTGT
GGTGCCAAGT-----
 A C G T A C G T A C G T C A T G G T A C A G T C C G T A C G T A C G T A A C T G A T G C C G A T C A G T C T A G C G A T
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TGCCAAAGCTTGT
CGTGCCAAG------
 A C G T A C G T A C G T C A T G G T A C A G T C C G T A C G T A C G T A A C T G A T G C C G A T C A G T C T A G C G A T
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:3
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:TGCCAAAGCTTGT
-----AAGCTTG-
 A C G T C A T G G T A C A G T C C G T A C G T A C G T A A C T G A T G C C G A T C A G T C T A G C G A T
A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TGCCAAAGCTTGT
TGCCAA-------
 A C G T C A T G G T A C A G T C C G T A C G T A C G T A A C T G A T G C C G A T C A G T C T A G C G A T
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGCCAAAGCTTGT
TTGCCAAG------
 A C G T A C G T C A T G G T A C A G T C C G T A C G T A C G T A A C T G A T G C C G A T C A G T C T A G C G A T
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TGCCAAAGCTTGT
--ACAAAG-----
 A C G T C A T G G T A C A G T C C G T A C G T A C G T A A C T G A T G C C G A T C A G T C T A G C G A T
A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T A C G T A C G T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-TGCCAAAGCTTGT
VRRACAAWGG----
 A C G T A C G T C A T G G T A C A G T C C G T A C G T A C G T A A C T G A T G C C G A T C A G T C T A G C G A T
T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGCCAAAGCTTGT
-RACAAWGG----
 A C G T C A T G G T A C A G T C C G T A C G T A C G T A A C T G A T G C C G A T C A G T C T A G C G A T
A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TGCCAAAGCTTGT
RHTGWCAR-------
 A C G T A C G T A C G T C A T G G T A C A G T C C G T A C G T A C G T A A C T G A T G C C G A T C A G T C T A G C G A T
C T A G G T A C A G C T C T A G G C T A G A T C C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---TGCCAAAGCTTGT
ARNTGACA--------
 A C G T A C G T A C G T A C G T C A T G G T A C A G T C C G T A C G T A C G T A A C T G A T G C C G A T C A G T C T A G C G A T
T G C A C T A G G A T C A C G T C T A G C G T A G T A C T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T