Information for 4-TGGTCAGACTCCAAAG (Motif 4)

C G A T A C T G A T C G C A G T A G T C C G T A A C T G G T C A A G T C C A G T G T A C G A T C C G T A G T C A C T G A A C T G
Reverse Opposite:
A G T C A G C T A C G T C G A T C A T G C A T G G C T A C T A G A C G T T A G C C G A T C T A G G C T A A T G C A G T C C G T A
p-value:1e-13
log p-value:-3.158e+01
Information Content per bp:1.729
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.8 +/- 22.7bp
Average Position of motif in Background45.7 +/- 4.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.60
Offset:7
Orientation:forward strand
Alignment:TGGTCAGACTCCAAAG-
-------ACATCAAAGG
 C G A T A C T G A T C G C A G T A G T C C G T A A C T G G T C A A G T C C A G T G T A C G A T C C G T A G T C A C T G A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T G C G C T A C G A T A T G C C G T A C G T A C G T A C T A G T A C G

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:2
Score:0.59
Offset:7
Orientation:forward strand
Alignment:TGGTCAGACTCCAAAG-
-------ACWTCAAAGG
 C G A T A C T G A T C G C A G T A G T C C G T A A C T G G T C A A G T C C A G T G T A C G A T C C G T A G T C A C T G A A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A T G C C G A T A C G T A G T C C G T A C G T A C G T A C T A G A T C G

TCF7L2/MA0523.1/Jaspar

Match Rank:3
Score:0.57
Offset:5
Orientation:forward strand
Alignment:TGGTCAGACTCCAAAG---
-----AAAGATCAAAGGAA
 C G A T A C T G A T C G C A G T A G T C C G T A A C T G G T C A A G T C C A G T G T A C G A T C C G T A G T C A C T G A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:4
Score:0.55
Offset:7
Orientation:forward strand
Alignment:TGGTCAGACTCCAAAG---
-------ACATCAAAGGNA
 C G A T A C T G A T C G C A G T A G T C C G T A A C T G G T C A A G T C C A G T G T A C G A T C C G T A G T C A C T G A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TGGTCAGACTCCAAAG
AGGTCA----------
 C G A T A C T G A T C G C A G T A G T C C G T A A C T G G T C A A G T C C A G T G T A C G A T C C G T A G T C A C T G A A C T G
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TGGTCAGACTCCAAAG
GGGGTCAAAGTCCAAT-
 A C G T C G A T A C T G A T C G C A G T A G T C C G T A A C T G G T C A A G T C C A G T G T A C G A T C C G T A G T C A C T G A A C T G
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:7
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--TGGTCAGACTCCAAAG
TRAGGTCA----------
 A C G T A C G T C G A T A C T G A T C G C A G T A G T C C G T A A C T G G T C A A G T C C A G T G T A C G A T C C G T A G T C A C T G A A C T G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0082.1_Tcf3_1/Jaspar

Match Rank:8
Score:0.53
Offset:4
Orientation:forward strand
Alignment:TGGTCAGACTCCAAAG-----
----TATAGATCAAAGGAAAA
 C G A T A C T G A T C G C A G T A G T C C G T A A C T G G T C A A G T C C A G T G T A C G A T C C G T A G T C A C T G A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:9
Score:0.52
Offset:4
Orientation:forward strand
Alignment:TGGTCAGACTCCAAAG----
----CANAGNNCAAAGTCCA
 C G A T A C T G A T C G C A G T A G T C C G T A A C T G G T C A A G T C C A G T G T A C G A T C C G T A G T C A C T G A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--TGGTCAGACTCCAAAG
AGRGGTCA----------
 A C G T A C G T C G A T A C T G A T C G C A G T A G T C C G T A A C T G G T C A A G T C C A G T G T A C G A T C C G T A G T C A C T G A A C T G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T