Information for 5-CAGCGTAATA (Motif 18)

G T A C C G T A A C T G A T G C A C T G A C G T C G T A C G T A C G A T C G T A
Reverse Opposite:
A C G T C G T A A C G T A C G T C G T A A G T C A T C G G T A C A C G T A C T G
p-value:1e-8
log p-value:-2.045e+01
Information Content per bp:1.893
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif12.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets56.1 +/- 30.2bp
Average Position of motif in Background48.1 +/- 21.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXD12/MA0873.1/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CAGCGTAATA-
AGTCGTAAAAA
 G T A C C G T A A C T G A T G C A C T G A C G T C G T A C G T A C G A T C G T A A C G T
T C G A T C A G A G C T T A G C T C A G G A C T C G T A C T G A C G T A G C T A G T C A

HOXD11/MA0908.1/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CAGCGTAATA-
-GTCGTAAAAA
 G T A C C G T A A C T G A T G C A C T G A C G T C G T A C G T A C G A T C G T A A C G T
A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A

HOXC12/MA0906.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CAGCGTAATA-
GGTCGTAAAAA
 G T A C C G T A A C T G A T G C A C T G A C G T C G T A C G T A C G A T C G T A A C G T
C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A

HOXC11/MA0651.1/Jaspar

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAGCGTAATA-
GGTCGTAAAAT
 G T A C C G T A A C T G A T G C A C T G A C G T C G T A C G T A C G A T C G T A A C G T
C T A G T C A G G A C T G A T C C T A G C G A T C G T A C G T A G T C A G C T A G C A T

Hoxa11/MA0911.1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAGCGTAATA--
GGTCGTAAAATT
 G T A C C G T A A C T G A T G C A C T G A C G T C G T A C G T A C G A T C G T A A C G T A C G T
C T A G T C A G A G C T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C A T C G A T

Spz1/MA0111.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAGCGTAATA--
-AGGGTAACAGC
 G T A C C G T A A C T G A T G C A C T G A C G T C G T A C G T A C G A T C G T A A C G T A C G T
A C G T C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C

HOXC10/MA0905.1/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CAGCGTAATA-
-GTCGTAAAAT
 G T A C C G T A A C T G A T G C A C T G A C G T C G T A C G T A C G A T C G T A A C G T
A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T

PH0077.1_Hoxd12/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CAGCGTAATA----
CAAGGTCGTAAAATCTT
 A C G T A C G T A C G T G T A C C G T A A C T G A T G C A C T G A C G T C G T A C G T A C G A T C G T A A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

HOXC13/MA0907.1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CAGCGTAATA-
GCTCGTAAAAA
 G T A C C G T A A C T G A T G C A C T G A C G T C G T A C G T A C G A T C G T A A C G T
A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.57
Offset:4
Orientation:forward strand
Alignment:CAGCGTAATA----
----GTCATAAAAN
 G T A C C G T A A C T G A T G C A C T G A C G T C G T A C G T A C G A T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T