Information for 1-YTGGMCTTTGAMC (Motif 1)

A G T C G C A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C
Reverse Opposite:
C T A G C A T G A G C T G A T C C G T A T C G A C T G A C A T G C A G T A G T C G A T C C G T A T C A G
p-value:1e-79
log p-value:-1.841e+02
Information Content per bp:1.620
Number of Target Sequences with motif138.0
Percentage of Target Sequences with motif18.45%
Number of Background Sequences with motif1086.6
Percentage of Background Sequences with motif2.23%
Average Position of motif in Targets52.2 +/- 24.5bp
Average Position of motif in Background50.2 +/- 28.8bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:YTGGMCTTTGAMC---
-TGGACTTTGNNCTCN
 A G T C G C A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C A C G T A C G T A C G T
A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.95
Offset:1
Orientation:reverse strand
Alignment:YTGGMCTTTGAMC----
-TGGACTTTGNNCTNTG
 A G T C G C A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C A C G T A C G T A C G T A C G T
A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

Hnf4a/MA0114.3/Jaspar

Match Rank:3
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-YTGGMCTTTGAMC--
ATTGGACTTTGACCCC
 A C G T A G T C G C A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C A C G T A C G T
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C

RXRG/MA0856.1/Jaspar

Match Rank:4
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:YTGGMCTTTGAMC--
-TGACCTTTGACCCC
 A G T C G C A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C A C G T A C G T
A C G T A G C T T C A G T G C A G T A C G T A C G A C T G A C T G A C T T C A G T G C A G T A C G T A C A G T C A G T C

Rxra/MA0512.2/Jaspar

Match Rank:5
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:YTGGMCTTTGAMC--
-TGACCTTTGACCCC
 A G T C G C A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C A C G T A C G T
A C G T A G C T T C A G T G C A T G A C T A G C A G C T G A C T A G C T T C A G T G C A G T A C G T A C A G T C A G T C

Nr2f6/MA0677.1/Jaspar

Match Rank:6
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:YTGGMCTTTGAMC--
-TGACCTTTGACCTN
 A G T C G C A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C A C G T A C G T
A C G T A G C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T T C A G T G C A G T A C G T A C A G C T A G T C

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:YTGGMCTTTGAMC
CTGACCTTTG---
 A G T C G C A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:8
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:YTGGMCTTTGAMC--
-TGACCTTTGACCTC
 A G T C G C A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C A C G T A C G T
A C G T G A C T T A C G T G C A G T A C G A T C A G C T G A C T G A C T T A C G T G C A G T A C G A T C G A C T A G T C

RXRB/MA0855.1/Jaspar

Match Rank:9
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:YTGGMCTTTGAMC--
-TGACCTTTGACCCC
 A G T C G C A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C A C G T A C G T
A C G T A G C T T C A G T G C A G T A C G T A C A G C T G A C T G A C T T C A G T G C A G T A C G A T C A G T C A G T C

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:YTGGMCTTTGAMC--
-TGACCTTTGCCCTA
 A G T C G C A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C A C G T A C G T
A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A