Information for 1-GAGTGCTCAC (Motif 5)

A C T G C G T A A C T G G A C T A T C G A G T C C G A T A G T C G C T A A G T C
Reverse Opposite:
C T A G C G A T A C T G G C T A A C T G A T G C C T G A A G T C A C G T A G T C
p-value:1e-9
log p-value:-2.200e+01
Information Content per bp:1.860
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif2.85%
Number of Background Sequences with motif120.2
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets63.5 +/- 24.4bp
Average Position of motif in Background54.6 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0099.1_Zfp691_1/Jaspar

Match Rank:1
Score:0.80
Offset:-4
Orientation:forward strand
Alignment:----GAGTGCTCAC---
CGAACAGTGCTCACTAT
 A C G T A C G T A C G T A C G T A C T G C G T A A C T G G A C T A T C G A G T C C G A T A G T C G C T A A G T C A C G T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGCTCAC
TTGAGTGSTT--
 A C G T A C G T A C T G C G T A A C T G G A C T A T C G A G T C C G A T A G T C G C T A A G T C
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:3
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--GAGTGCTCAC
TTAAGTGCTT--
 A C G T A C G T A C T G C G T A A C T G G A C T A T C G A G T C C G A T A G T C G C T A A G T C
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GAGTGCTCAC
CNGTCCTCCC
 A C T G C G T A A C T G G A C T A T C G A G T C C G A T A G T C G C T A A G T C
A T G C T C G A T A C G A C G T A T G C A G T C A C G T A G T C A G T C G A T C

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:5
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGCTCAC
CTTGAGTGGCT--
 A C G T A C G T A C G T A C T G C G T A A C T G G A C T A T C G A G T C C G A T A G T C G C T A A G T C
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GAGTGCTCAC
CTYRAGTGSY---
 A C G T A C G T A C G T A C T G C G T A A C T G G A C T A T C G A G T C C G A T A G T C G C T A A G T C
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GAGTGCTCAC
BTBRAGTGSN---
 A C G T A C G T A C G T A C T G C G T A A C T G G A C T A T C G A G T C C G A T A G T C G C T A A G T C
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAGTGCTCAC
TTRAGTGSYK--
 A C G T A C G T A C T G C G T A A C T G G A C T A T C G A G T C C G A T A G T C G C T A A G T C
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GAGTGCTCAC---
NTNTATGTGCACATNNN
 A C G T A C G T A C G T A C G T A C T G C G T A A C T G G A C T A T C G A G T C C G A T A G T C G C T A A G T C A C G T A C G T A C G T
C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

PB0118.1_Esrra_2/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GAGTGCTCAC----
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C T G C G T A A C T G G A C T A T C G A G T C C G A T A G T C G C T A A G T C A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C