Information for 1-CAGGCGGAGCGACGGT (Motif 1)

A G T C C G T A A C T G A T C G G T A C A C T G A C T G C G T A A C T G G T A C A T C G G C T A A G T C A C T G A C T G A G C T
Reverse Opposite:
T C G A A G T C A G T C T A C G C G A T A T G C A C T G A G T C A C G T A G T C G T A C A C T G A T G C G T A C C G A T A C T G
p-value:1e-17
log p-value:-4.115e+01
Information Content per bp:1.792
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.54%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.9 +/- 22.2bp
Average Position of motif in Background43.6 +/- 18.4bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CAGGCGGAGCGACGGT
----CGGAGC------
 A G T C C G T A A C T G A T C G G T A C A C T G A C T G C G T A A C T G G T A C A T C G G C T A A G T C A C T G A C T G A G C T
A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCGGAGCGACGGT---
YCAGGCWCAGTACCAGGCTC
 A C G T A G T C C G T A A C T G A T C G G T A C A C T G A C T G C G T A A C T G G T A C A T C G G C T A A G T C A C T G A C T G A G C T A C G T A C G T A C G T
A G T C T G A C G C T A C T A G C T A G G A T C G C A T A T G C C G T A C T A G C A G T T C G A A T G C A G T C C G T A C A T G C T A G G T A C G A C T A T G C

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:3
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CAGGCGGAGCGACGGT
RGKGGGCGGAGC------
 A C G T A C G T A G T C C G T A A C T G A T C G G T A C A C T G A C T G C G T A A C T G G T A C A T C G G C T A A G T C A C T G A C T G A G C T
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CAGGCGGAGCGACGGT
CCTGCTGAGH------
 A G T C C G T A A C T G A T C G G T A C A C T G A C T G C G T A A C T G G T A C A T C G G C T A A G T C A C T G A C T G A G C T
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T A C G T A C G T

ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAGGCGGAGCGACGGT
GAGSCCGAGC------
 A G T C C G T A A C T G A T C G G T A C A C T G A C T G C G T A A C T G G T A C A T C G G C T A A G T C A C T G A C T G A G C T
A C T G C G T A A C T G A T G C T G A C G A T C A T C G T G C A A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.51
Offset:6
Orientation:forward strand
Alignment:CAGGCGGAGCGACGGT
------CAGCC-----
 A G T C C G T A A C T G A T C G G T A C A C T G A C T G C G T A A C T G G T A C A T C G G C T A A G T C A C T G A C T G A G C T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:7
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---CAGGCGGAGCGACGGT
TCNCCTGCTGNGNNN----
 A C G T A C G T A C G T A G T C C G T A A C T G A T C G G T A C A C T G A C T G C G T A A C T G G T A C A T C G G C T A A G T C A C T G A C T G A G C T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T A C G T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:8
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-CAGGCGGAGCGACGGT
GGGGGCGGGGCC-----
 A C G T A G T C C G T A A C T G A T C G G T A C A C T G A C T G C G T A A C T G G T A C A T C G G C T A A G T C A C T G A C T G A G C T
T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:9
Score:0.49
Offset:-4
Orientation:reverse strand
Alignment:----CAGGCGGAGCGACGGT
NAGANTGGCGGGGNGNA---
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T C G G T A C A C T G A C T G C G T A A C T G G T A C A T C G G C T A A G T C A C T G A C T G A G C T
T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.49
Offset:-3
Orientation:reverse strand
Alignment:---CAGGCGGAGCGACGGT
NNTCCTGCTGTGNNN----
 A C G T A C G T A C G T A G T C C G T A A C T G A T C G G T A C A C T G A C T G C G T A A C T G G T A C A T C G G C T A A G T C A C T G A C T G A G C T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T A C G T A C G T A C G T