Information for 17-AGAGATCACAACAGGA (Motif 28)

C T G A T C A G C T G A T C A G T C G A A C G T T A G C G T C A T A G C T G C A T C G A T A G C C G T A C T A G T A C G T C G A
Reverse Opposite:
A G C T A T G C G A T C G C A T A T C G A G C T A C G T A T C G C A G T A T C G T G C A A G C T A G T C G A C T A G T C G A C T
p-value:1e-5
log p-value:-1.181e+01
Information Content per bp:1.423
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.35%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets54.4 +/- 18.0bp
Average Position of motif in Background53.4 +/- 13.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)2.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0120.1_Foxj1_2/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:AGAGATCACAACAGGA-
--ATGTCACAACAACAC
 C T G A T C A G C T G A T C A G T C G A A C G T T A G C G T C A T A G C T G C A T C G A T A G C C G T A C T A G T A C G T C G A A C G T
A C G T A C G T C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:AGAGATCACAACAGGA--
---GAGCACAGCAGGACA
 C T G A T C A G C T G A T C A G T C G A A C G T T A G C G T C A T A G C T G C A T C G A T A G C C G T A C T A G T A C G T C G A A C G T A C G T
A C G T A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.64
Offset:6
Orientation:forward strand
Alignment:AGAGATCACAACAGGA--
------CACAGCAGGGGG
 C T G A T C A G C T G A T C A G T C G A A C G T T A G C G T C A T A G C T G C A T C G A T A G C C G T A C T A G T A C G T C G A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:4
Score:0.62
Offset:3
Orientation:forward strand
Alignment:AGAGATCACAACAGGA--
---CCACACAGCAGGAGA
 C T G A T C A G C T G A T C A G T C G A A C G T T A G C G T C A T A G C T G C A T C G A T A G C C G T A C T A G T A C G T C G A A C G T A C G T
A C G T A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----AGAGATCACAACAGGA
AADGAGVCANYASTACAGNC
 A C G T A C G T A C G T A C G T C T G A T C A G C T G A T C A G T C G A A C G T T A G C G T C A T A G C T G C A T C G A T A G C C G T A C T A G T A C G T C G A
G C T A T C G A C G A T C T A G C T G A C A T G T A G C G T A C C T G A C A T G G A T C G C T A T A G C G A C T C T G A A T G C T G C A C T A G C T G A G A T C

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:AGAGATCACAACAGGA----
-----DCHCAGCAGGRGGCC
 C T G A T C A G C T G A T C A G T C G A A C G T T A G C G T C A T A G C T G C A T C G A T A G C C G T A C T A G T A C G T C G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.59
Offset:9
Orientation:forward strand
Alignment:AGAGATCACAACAGGA---
---------AACAGGAAGT
 C T G A T C A G C T G A T C A G T C G A A C G T T A G C G T C A T A G C T G C A T C G A T A G C C G T A C T A G T A C G T C G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:AGAGATCACAACAGGA--
---CCACACAGCAGGAGA
 C T G A T C A G C T G A T C A G T C G A A C G T T A G C G T C A T A G C T G C A T C G A T A G C C G T A C T A G T A C G T C G A A C G T A C G T
A C G T A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.57
Offset:9
Orientation:reverse strand
Alignment:AGAGATCACAACAGGA---
---------ANCAGGATGT
 C T G A T C A G C T G A T C A G T C G A A C G T T A G C G T C A T A G C T G C A T C G A T A G C C G T A C T A G T A C G T C G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A T A G C G T A C G T C A A C T G A C T G C G T A C G A T T A C G A G C T

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.55
Offset:9
Orientation:forward strand
Alignment:AGAGATCACAACAGGA---
---------NACAGGAAAT
 C T G A T C A G C T G A T C A G T C G A A C G T T A G C G T C A T A G C T G C A T C G A T A G C C G T A C T A G T A C G T C G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A C T G A A G T C G T C A A C T G A C T G C G T A C G T A C T G A A G C T