Motif 24

Information for 15-CCCGGCCCGCGGCTRG (Motif 24)

Reverse Opposite:

p-value:	1e-8
log p-value:	-1.917e+01
Information Content per bp:	1.790
Number of Target Sequences with motif	6.0
Percentage of Target Sequences with motif	0.70%
Number of Background Sequences with motif	7.7
Percentage of Background Sequences with motif	0.02%
Average Position of motif in Targets	38.0 +/- 19.9bp
Average Position of motif in Background	57.0 +/- 18.4bp
Strand Bias (log2 ratio + to - strand density)	1.3
Multiplicity (# of sites on avg that occur together)	1.17
Motif File:	file (matrix) reverse opposite
SVG Files for Logos:	forward logo reverse opposite

Matches to Known Motifs

Tcfl5/MA0632.1/Jaspar

Match Rank:	1
Score:	0.56
Offset:	3
Orientation:	forward strand
Alignment:	CCCGGCCCGCGGCTRG ---GGCACGTGCC---

TFAP2A/MA0003.3/Jaspar

Match Rank:	2
Score:	0.56
Offset:	3
Orientation:	reverse strand
Alignment:	CCCGGCCCGCGGCTRG ---NGCCTGAGGCN--

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:	3
Score:	0.55
Offset:	-1
Orientation:	reverse strand
Alignment:	-CCCGGCCCGCGGCTRG DCHCAGCAGGRGGCC--

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:	4
Score:	0.55
Offset:	3
Orientation:	reverse strand
Alignment:	CCCGGCCCGCGGCTRG ---TGCCTGAGGCN--

PB0147.1_Max_2/Jaspar

Match Rank:	5
Score:	0.54
Offset:	1
Orientation:	forward strand
Alignment:	CCCGGCCCGCGGCTRG -GTGCCACGCGACTG-

HES5/MA0821.1/Jaspar

Match Rank:	6
Score:	0.54
Offset:	2
Orientation:	forward strand
Alignment:	CCCGGCCCGCGGCTRG --CGGCACGTGCCA--

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:	7
Score:	0.54
Offset:	3
Orientation:	reverse strand
Alignment:	CCCGGCCCGCGGCTRG ---NGCCTNAGGCN--

Zfx/MA0146.2/Jaspar

Match Rank:	8
Score:	0.54
Offset:	1
Orientation:	forward strand
Alignment:	CCCGGCCCGCGGCTRG -GGGGCCGAGGCCTG-

POL006.1_BREu/Jaspar

Match Rank:	9
Score:	0.54
Offset:	3
Orientation:	reverse strand
Alignment:	CCCGGCCCGCGGCTRG ---GGCGCGCT-----

HES7/MA0822.1/Jaspar

Match Rank:	10
Score:	0.54
Offset:	2
Orientation:	reverse strand
Alignment:	CCCGGCCCGCGGCTRG --TGGCACGTGCCA--