Information for 9-CCGTCTCCGCHGG (Motif 5)

A G T C A G T C A C T G A C G T A G T C A G C T A G T C A G T C A C T G A T G C G A T C A C T G A C T G
Reverse Opposite:
G T A C A G T C C A T G A T C G A G T C A C T G A C T G C T G A A C T G T C G A G T A C C T A G A C T G
p-value:1e-7
log p-value:-1.832e+01
Information Content per bp:1.843
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif15.2
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets46.0 +/- 27.6bp
Average Position of motif in Background54.0 +/- 22.5bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EGR1/MA0162.2/Jaspar

Match Rank:1
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CCGTCTCCGCHGG
CCCCCGCCCCCGCC--
 A C G T A C G T A C G T A G T C A G T C A C T G A C G T A G T C A G C T A G T C A G T C A C T G A T G C G A T C A C T G A C T G
A T G C G A T C A G T C G T A C G A T C C T A G A G T C A G T C A G T C G T A C A G T C C A T G A T G C T G A C A C G T A C G T

PB0010.1_Egr1_1/Jaspar

Match Rank:2
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCGTCTCCGCHGG
TCCGCCCCCGCATT
 A C G T A G T C A G T C A C T G A C G T A G T C A G C T A G T C A G T C A C T G A T G C G A T C A C T G A C T G
G A C T G T A C G A T C T C A G A G T C A T G C A G T C G T A C G A T C A C T G A G T C C G T A G A C T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CCGTCTCCGCHGG-----
---DCHCAGCAGGRGGCC
 A G T C A G T C A C T G A C G T A G T C A G C T A G T C A G T C A C T G A T G C G A T C A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CCGTCTCCGCHGG
---DCTCAGCAGG
 A G T C A G T C A C T G A C G T A G T C A G C T A G T C A G T C A C T G A T G C G A T C A C T G A C T G
A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CCGTCTCCGCHGG---
----CACAGCAGGGGG
 A G T C A G T C A C T G A C G T A G T C A G C T A G T C A G T C A C T G A T G C G A T C A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

MZF1/MA0056.1/Jaspar

Match Rank:6
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CCGTCTCCGCHGG
---TCCCCA----
 A G T C A G T C A C T G A C G T A G T C A G C T A G T C A G T C A C T G A T G C G A T C A C T G A C T G
A C G T A C G T A C G T A G C T A G T C G T A C A G T C G T A C T C G A A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCGTCTCCGCHGG---
-CCACACAGCAGGAGA
 A G T C A G T C A C T G A C G T A G T C A G C T A G T C A G T C A C T G A T G C G A T C A C T G A C T G A C G T A C G T A C G T
A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CCGTCTCCGCHGG----
--NTCCCCTCAGGGANT
 A G T C A G T C A C T G A C G T A G T C A G C T A G T C A G T C A C T G A T G C G A T C A C T G A C T G A C G T A C G T A C G T A C G T
A C G T A C G T G A C T C G A T G A T C A T G C G T A C A G T C A G C T T A G C T C G A C T A G A C T G T A C G C G T A G C T A G C A T

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCGTCTCCGCHGG---
-CCACACAGCAGGAGA
 A G T C A G T C A C T G A C G T A G T C A G C T A G T C A G T C A C T G A T G C G A T C A C T G A C T G A C G T A C G T A C G T
A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CCGTCTCCGCHGG
KGCCCTTCCCCA----
 A C G T A C G T A C G T A G T C A G T C A C T G A C G T A G T C A G C T A G T C A G T C A C T G A T G C G A T C A C T G A C T G
C A G T C A T G G A T C G A T C G A T C G A C T A G C T T G A C G A T C G A T C G A T C C T G A A C G T A C G T A C G T A C G T