Information for 9-TGAGCTCAAGAGG (Motif 3)

C G A T A T C G C G T A A C T G A T G C A C G T A T G C G T C A T C G A T A C G C G T A A C T G C T A G
Reverse Opposite:
A G T C G T A C G A C T A T G C A C G T A C G T A T C G C G T A A T C G A G T C C G A T A T G C C G T A
p-value:1e-12
log p-value:-2.908e+01
Information Content per bp:1.786
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif21.9
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets65.2 +/- 21.4bp
Average Position of motif in Background41.2 +/- 20.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2f6(var.2)/MA0728.1/Jaspar

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TGAGCTCAAGAGG---
-GAGGTCAAAAGGTCA
 C G A T A T C G C G T A A C T G A T G C A C G T A T G C G T C A T C G A T A C G C G T A A C T G C T A G A C G T A C G T A C G T
A C G T T C A G C T G A A C T G C T A G A C G T A G T C G T C A C G T A C T G A C G T A A C T G A C T G C G A T A G T C C T G A

NR2F1/MA0017.2/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGAGCTCAAGAGG
CAAAGGTCAAGGG-
 A C G T C G A T A T C G C G T A A C T G A T G C A C G T A T G C G T C A T C G A T A C G C G T A A C T G C T A G
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T

PH0171.1_Nkx2-1/Jaspar

Match Rank:3
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGAGCTCAAGAGG----
-AANTTCAAGTGGCTTN
 C G A T A T C G C G T A A C T G A T G C A C G T A T G C G T C A T C G A T A C G C G T A A C T G C T A G A C G T A C G T A C G T A C G T
A C G T C G T A C G T A C A G T A C G T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G T A G C G A C T A C G T T C G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGAGCTCAAGAGG
TRAGGTCA-----
 C G A T A T C G C G T A A C T G A T G C A C G T A T G C G T C A T C G A T A C G C G T A A C T G C T A G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T

Rarg/MA0859.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TGAGCTCAAGAGG----
-AAGGTCAAAAGGTCAA
 C G A T A T C G C G T A A C T G A T G C A C G T A T G C G T C A T C G A T A C G C G T A A C T G C T A G A C G T A C G T A C G T A C G T
A C G T T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A

RARA/MA0729.1/Jaspar

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TGAGCTCAAGAGG------
-GAGGTCAAAAGGTCAATG
 C G A T A T C G C G T A A C T G A T G C A C G T A T G C G T C A T C G A T A C G C G T A A C T G C T A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G

PB0057.1_Rxra_1/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----TGAGCTCAAGAGG
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T A C G T C G A T A T C G C G T A A C T G A T G C A C G T A T G C G T C A T C G A T A C G C G T A A C T G C T A G
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

PH0111.1_Nkx2-2/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TGAGCTCAAGAGG----
NANTTTCAAGTGGTTAN
 C G A T A T C G C G T A A C T G A T G C A C G T A T G C G T C A T C G A T A C G C G T A A C T G C T A G A C G T A C G T A C G T A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

NKX2-3/MA0672.1/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:TGAGCTCAAGAGG-
----NTCAAGTGGN
 C G A T A T C G C G T A A C T G A T G C A C G T A T G C G T C A T C G A T A C G C G T A A C T G C T A G A C G T
A C G T A C G T A C G T A C G T A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:10
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TGAGCTCAAGAGG-
----BTBRAGTGSN
 C G A T A T C G C G T A A C T G A T G C A C G T A T G C G T C A T C G A T A C G C G T A A C T G C T A G A C G T
A C G T A C G T A C G T A C G T A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C