Information for 5-CAAAGGTCAG (Motif 10)

T G A C G T C A T G C A C G T A T A C G C T A G A C G T G A T C C T G A A C T G
Reverse Opposite:
T G A C A G C T C T A G G T C A A G T C A T G C A C G T A C G T A C G T A C T G
p-value:1e-9
log p-value:-2.230e+01
Information Content per bp:1.825
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.90%
Number of Background Sequences with motif109.3
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets55.0 +/- 23.4bp
Average Position of motif in Background51.6 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.92
Offset:0
Orientation:forward strand
Alignment:CAAAGGTCAG
CAAAGGTCAG
 T G A C G T C A T G C A C G T A T A C G C T A G A C G T G A T C C T G A A C T G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:2
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---CAAAGGTCAG
ANGNAAAGGTCA-
 A C G T A C G T A C G T T G A C G T C A T G C A C G T A T A C G C T A G A C G T G A T C C T G A A C T G
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:3
Score:0.86
Offset:-3
Orientation:forward strand
Alignment:---CAAAGGTCAG---
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T T G A C G T C A T G C A C G T A T A C G C T A G A C G T G A T C C T G A A C T G A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0049.1_Nr2f2_1/Jaspar

Match Rank:4
Score:0.86
Offset:-3
Orientation:forward strand
Alignment:---CAAAGGTCAG---
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T T G A C G T C A T G C A C G T A T A C G C T A G A C G T G A T C C T G A A C T G A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

Nr2f6/MA0677.1/Jaspar

Match Rank:5
Score:0.81
Offset:-5
Orientation:forward strand
Alignment:-----CAAAGGTCAG
GAGGTCAAAGGTCA-
 A C G T A C G T A C G T A C G T A C G T T G A C G T C A T G C A C G T A T A C G C T A G A C G T G A T C C T G A A C T G
T C A G T C G A C A T G C A T G A C G T A G T C C G T A C T G A T C G A A C T G C A T G A C G T A G T C C T G A A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:6
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CAAAGGTCAG---
CAAAGGTCAAGGG
 T G A C G T C A T G C A C G T A T A C G C T A G A C G T G A T C C T G A A C T G A C G T A C G T A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

Rxra/MA0512.2/Jaspar

Match Rank:7
Score:0.80
Offset:-5
Orientation:forward strand
Alignment:-----CAAAGGTCAG
GGGGTCAAAGGTCA-
 A C G T A C G T A C G T A C G T A C G T T G A C G T C A T G C A C G T A T A C G C T A G A C G T G A T C C T G A A C T G
T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A A C G T

RXRG/MA0856.1/Jaspar

Match Rank:8
Score:0.79
Offset:-5
Orientation:forward strand
Alignment:-----CAAAGGTCAG
GGGGTCAAAGGTCA-
 A C G T A C G T A C G T A C G T A C G T T G A C G T C A T G C A C G T A T A C G C T A G A C G T G A T C C T G A A C T G
T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A A C G T

RXRB/MA0855.1/Jaspar

Match Rank:9
Score:0.79
Offset:-5
Orientation:forward strand
Alignment:-----CAAAGGTCAG
GGGGTCAAAGGTCA-
 A C G T A C G T A C G T A C G T A C G T T G A C G T C A T G C A C G T A T A C G C T A G A C G T G A T C C T G A A C T G
T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.78
Offset:-5
Orientation:forward strand
Alignment:-----CAAAGGTCAG
TAGGGCAAAGGTCA-
 A C G T A C G T A C G T A C G T A C G T T G A C G T C A T G C A C G T A T A C G C T A G A C G T G A T C C T G A A C T G
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T