Information for 11-CAGTGCGTGCTAT (Motif 20)

G T A C C T G A A C T G A C G T A C T G A T G C A T C G A C G T A C T G A G T C A C G T G T C A A C G T
Reverse Opposite:
T G C A A C G T T G C A C T A G A G T C G T C A T A G C A T C G A G T C G T C A A G T C A G C T C A T G
p-value:1e-7
log p-value:-1.667e+01
Information Content per bp:1.784
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif5.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets36.6 +/- 13.6bp
Average Position of motif in Background58.8 +/- 21.4bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:1
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CAGTGCGTGCTAT
--TTGCGTGCVA-
 G T A C C T G A A C T G A C G T A C T G A T G C A T C G A C G T A C T G A G T C A C G T G T C A A C G T
A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CAGTGCGTGCTAT
---TGCGTG----
 G T A C C T G A A C T G A C G T A C T G A T G C A T C G A C G T A C T G A G T C A C G T G T C A A C G T
A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CAGTGCGTGCTAT-
NNGCGTGTGTGCNGCN
 A C G T A C G T G T A C C T G A A C T G A C G T A C T G A T G C A T C G A C G T A C T G A G T C A C G T G T C A A C G T A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

PB0195.1_Zbtb3_2/Jaspar

Match Rank:4
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------CAGTGCGTGCTAT
NNNNTGCCAGTGATTG----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C C T G A A C T G A C G T A C T G A T G C A T C G A C G T A C T G A G T C A C G T G T C A A C G T
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G A C G T A C G T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CAGTGCGTGCTAT
--GGACGTGC---
 G T A C C T G A A C T G A C G T A C T G A T G C A T C G A C G T A C T G A G T C A C G T G T C A A C G T
A C G T A C G T T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:6
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------CAGTGCGTGCTAT
NNNANTGCAGTGCNNTT---
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C C T G A A C T G A C G T A C T G A T G C A T C G A C G T A C T G A G T C A C G T G T C A A C G T
T G A C T A C G T A C G T G C A T C G A A C G T T A C G G T A C C G T A A T C G A G C T C A T G T A G C T A C G T C G A G A C T G A C T A C G T A C G T A C G T

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CAGTGCGTGCTAT
--RTACGTGC---
 G T A C C T G A A C T G A C G T A C T G A T G C A T C G A C G T A C T G A G T C A C G T G T C A A C G T
A C G T A C G T C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CAGTGCGTGCTAT
TTRAGTGSYK-----
 A C G T A C G T G T A C C T G A A C T G A C G T A C T G A T G C A T C G A C G T A C T G A G T C A C G T G T C A A C G T
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T A C G T A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CAGTGCGTGCTAT
TTAAGTGCTT-----
 A C G T A C G T G T A C C T G A A C T G A C G T A C T G A T G C A T C G A C G T A C T G A G T C A C G T G T C A A C G T
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T A C G T A C G T A C G T A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---CAGTGCGTGCTAT
NTCAAGTGGN------
 A C G T A C G T A C G T G T A C C T G A A C T G A C G T A C T G A T G C A T C G A C G T A C T G A G T C A C G T G T C A A C G T
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T