Information for 9-CCTAGGAGCG (Motif 13)

A T G C A G T C G A C T C G T A A T C G A T C G T C G A A T C G A G T C A T C G
Reverse Opposite:
A T G C C T A G A T G C A G C T A T G C A T G C C G A T C T G A C T A G A T C G
p-value:1e-8
log p-value:-2.014e+01
Information Content per bp:1.832
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif2.19%
Number of Background Sequences with motif172.8
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets53.3 +/- 23.4bp
Average Position of motif in Background44.4 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CCTAGGAGCG
---CGGAGC-
 A T G C A G T C G A C T C G T A A T C G A T C G T C G A A T C G A G T C A T C G
A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CCTAGGAGCG--
CCGCATAGCAACGGA
 A C G T A C G T A C G T A T G C A G T C G A C T C G T A A T C G A T C G T C G A A T C G A G T C A T C G A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CCTAGGAGCG--
TACCATAGCAACGGT
 A C G T A C G T A C G T A T G C A G T C G A C T C G T A A T C G A T C G T C G A A T C G A G T C A T C G A C G T A C G T
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.57
Offset:5
Orientation:forward strand
Alignment:CCTAGGAGCG
-----CAGCC
 A T G C A G T C G A C T C G T A A T C G A T C G T C G A A T C G A G T C A T C G
A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

PB0054.1_Rfx3_1/Jaspar

Match Rank:5
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------CCTAGGAGCG------
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G A C T C G T A A T C G A T C G T C G A A T C G A G T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:6
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----CCTAGGAGCG
TGTTKCCTAGCAACM
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C G A C T C G T A A T C G A T C G T C G A A T C G A G T C A T C G
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CCTAGGAGCG-
SCCTAGCAACAG
 A C G T A T G C A G T C G A C T C G T A A T C G A T C G T C G A A T C G A G T C A T C G A C G T
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

PB0181.1_Spdef_2/Jaspar

Match Rank:8
Score:0.52
Offset:-8
Orientation:forward strand
Alignment:--------CCTAGGAGCG
GATAACATCCTAGTAG--
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G A C T C G T A A T C G A T C G T C G A A T C G A G T C A T C G
C T A G C G T A A C G T G C T A C T G A A G T C C G T A C G A T G A T C A G T C A G C T G C T A A C T G G C A T C G T A T C A G A C G T A C G T

PB0110.1_Bcl6b_2/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-CCTAGGAGCG-----
NNTNAGGGGCGGNNNN
 A C G T A T G C A G T C G A C T C G T A A T C G A T C G T C G A A T C G A G T C A T C G A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C A G T C A G T G C T A T A C G T A C G A C T G C A T G G A T C C T A G C T A G T A C G T A C G T C G A C A G T

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:10
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CCTAGGAGCG----
ATCCACAGGTGCGAAAA
 A C G T A C G T A C G T A T G C A G T C G A C T C G T A A T C G A T C G T C G A A T C G A G T C A T C G A C G T A C G T A C G T A C G T
T C G A A C G T G T A C G T A C T G C A G T A C G T C A A T C G T A C G A G C T A C T G A G T C C T A G T C G A C G T A G T C A C G T A