Information for 1-GCATTGGCAA (Motif 6)

C T A G G T A C G T C A C G A T C G A T A C T G C T A G G T A C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A G T C G T A C C G T A G C T A A C G T A C T G A G T C
p-value:1e-11
log p-value:-2.717e+01
Information Content per bp:1.852
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.50%
Number of Background Sequences with motif29.2
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets48.1 +/- 33.2bp
Average Position of motif in Background55.3 +/- 28.1bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GCATTGGCAA-
-NNTTGGCANN
 C T A G G T A C G T C A C G A T C G A T A C T G C T A G G T A C C G T A C G T A A C G T
A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.71
Offset:3
Orientation:forward strand
Alignment:GCATTGGCAA
---TTGGCA-
 C T A G G T A C G T C A C G A T C G A T A C T G C T A G G T A C C G T A C G T A
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:GCATTGGCAA-
--NTTGGCANN
 C T A G G T A C G T C A C G A T C G A T A C T G C T A G G T A C C G T A C G T A A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.69
Offset:3
Orientation:forward strand
Alignment:GCATTGGCAA-
---TTGCCAAG
 C T A G G T A C G T C A C G A T C G A T A C T G C T A G G T A C C G T A C G T A A C G T
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:GCATTGGCAA
-GGTTGGCAT
 C T A G G T A C G T C A C G A T C G A T A C T G C T A G G T A C C G T A C G T A
A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GCATTGGCAA
CCGATTGGCT-
 A C G T C T A G G T A C G T C A C G A T C G A T A C T G C T A G G T A C C G T A C G T A
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCATTGGCAA-
GTTGCCATGGCAAC
 A C G T A C G T A C G T C T A G G T A C G T C A C G A T C G A T A C T G C T A G G T A C C G T A C G T A A C G T
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCATTGGCAA--
TTGCCATGGCAACN
 A C G T A C G T C T A G G T A C G T C A C G A T C G A T A C T G C T A G G T A C C G T A C G T A A C G T A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCATTGGCAA--
--AATGGAAAAT
 C T A G G T A C G T C A C G A T C G A T A C T G C T A G G T A C C G T A C G T A A C G T A C G T
A C G T A C G T T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T

NFAT5/MA0606.1/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GCATTGGCAA--
--NATGGAAAAN
 C T A G G T A C G T C A C G A T C G A T A C T G C T A G G T A C C G T A C G T A A C G T A C G T
A C G T A C G T G C T A C T G A C G A T T C A G C T A G C G T A C G T A C G T A C G T A A C G T