Information for 13-CGTCTGAAAT (Motif 41)

T A G C A T C G C G A T G T A C G C A T A C T G T C G A G T C A C G T A C G A T
Reverse Opposite:
G C T A A C G T A C G T A G C T T G A C C G T A A C T G C G T A A T G C A T C G
p-value:1e-5
log p-value:-1.330e+01
Information Content per bp:1.718
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.78%
Number of Background Sequences with motif163.3
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets44.4 +/- 30.3bp
Average Position of motif in Background50.4 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0065.1_Hoxc10/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CGTCTGAAAT---
TAAAGTCGTAAAACGT
 A C G T A C G T A C G T T A G C A T C G C G A T G T A C G C A T A C T G T C G A G T C A C G T A C G A T A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

PH0077.1_Hoxd12/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CGTCTGAAAT----
CAAGGTCGTAAAATCTT
 A C G T A C G T A C G T T A G C A T C G C G A T G T A C G C A T A C T G T C G A G T C A C G T A C G A T A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

PH0067.1_Hoxc12/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CGTCTGAAAT----
TTAGGTCGTAAAATTTC
 A C G T A C G T A C G T T A G C A T C G C G A T G T A C G C A T A C T G T C G A G T C A C G T A C G A T A C G T A C G T A C G T A C G T
G A C T G C A T T C G A T C A G T C A G A G C T G T A C C T A G A C G T G C T A C G T A G C T A G C T A G C A T A G C T C G A T G A T C

PH0066.1_Hoxc11/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CGTCTGAAAT---
TAAAGTCGTAAAATAG
 A C G T A C G T A C G T T A G C A T C G C G A T G T A C G C A T A C T G T C G A G T C A C G T A C G A T A C G T A C G T A C G T
G A C T C T G A C G T A C T G A T C A G A G C T G A T C C T A G A C G T C G T A C G T A C G T A G C T A G A C T C T G A C A T G

PB0013.1_Eomes_1/Jaspar

Match Rank:5
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----CGTCTGAAAT--
GAAAAGGTGTGAAAATT
 A C G T A C G T A C G T A C G T A C G T T A G C A T C G C G A T G T A C G C A T A C T G T C G A G T C A C G T A C G A T A C G T A C G T
A C G T T C G A G C T A C T G A C T G A C T A G A C T G A G C T C T A G G A C T A C T G C T G A G T C A G T C A G C T A G A C T G A C T

PH0076.1_Hoxd11/Jaspar

Match Rank:6
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CGTCTGAAAT----
TAAGGTCGTAAAATCCT
 A C G T A C G T A C G T T A G C A T C G C G A T G T A C G C A T A C T G T C G A G T C A C G T A C G A T A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T C A G T C A G A G C T G A T C C T A G A C G T C G T A C G T A G C T A G C T A G C A T G A T C G A T C C A G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGTCTGAAAT
GGTCTGGCAT
 T A G C A T C G C G A T G T A C G C A T A C T G T C G A G T C A C G T A C G A T
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T

PH0047.1_Hoxa11/Jaspar

Match Rank:8
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CGTCTGAAAT---
TAAAGTCGTAAAACAT
 A C G T A C G T A C G T T A G C A T C G C G A T G T A C G C A T A C T G T C G A G T C A C G T A C G A T A C G T A C G T A C G T
G C A T C T G A G C T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C C T G A A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CGTCTGAAAT
VBSYGTCTGG---
 A C G T A C G T A C G T T A G C A T C G C G A T G T A C G C A T A C T G T C G A G T C A C G T A C G A T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:10
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CGTCTGAAAT-
-GTCGTAAAAT
 T A G C A T C G C G A T G T A C G C A T A C T G T C G A G T C A C G T A C G A T A C G T
A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T