Information for 11-CAAGATCAAT (Motif 39)

G T A C C G T A C G T A A C T G C G T A A G C T A G T C G T C A C G T A G C A T
Reverse Opposite:
C G T A A C G T A C G T A C T G T C G A G C A T A G T C A C G T A C G T A C T G
p-value:1e-6
log p-value:-1.566e+01
Information Content per bp:1.810
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif53.0
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets55.9 +/- 26.6bp
Average Position of motif in Background41.3 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ESRRB/MA0141.3/Jaspar

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-CAAGATCAAT
TCAAGGTCATA
 A C G T G T A C C G T A C G T A A C T G C G T A A G C T A G T C G T C A C G T A G C A T
G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:2
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CAAGATCAAT
BTCAAGGTCA--
 A C G T A C G T G T A C C G T A C G T A A C T G C G T A A G C T A G T C G T C A C G T A G C A T
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:3
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CAAGATCAAT
TCAAGGTCAT-
 A C G T G T A C C G T A C G T A A C T G C G T A A G C T A G T C G T C A C G T A G C A T
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T

Tcf7/MA0769.1/Jaspar

Match Rank:4
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CAAGATCAAT--
AAAGATCAAAGG
 G T A C C G T A C G T A A C T G C G T A A G C T A G T C G T C A C G T A G C A T A C G T A C G T
C T G A C T G A C G T A A T C G C G T A A C G T A T G C C G T A T C G A C G T A C T A G T C A G

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CAAGATCAAT
TCAAGGTCAN-
 A C G T G T A C C G T A C G T A A C T G C G T A A G C T A G T C G T C A C G T A G C A T
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:6
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CAAGATCAAT
CAAGGHCANV
 G T A C C G T A C G T A A C T G C G T A A G C T A G T C G T C A C G T A G C A T
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

LEF1/MA0768.1/Jaspar

Match Rank:7
Score:0.71
Offset:0
Orientation:forward strand
Alignment:CAAGATCAAT-----
AAAGATCAAAGGGTT
 G T A C C G T A C G T A A C T G C G T A A G C T A G T C G T C A C G T A G C A T A C G T A C G T A C G T A C G T A C G T
T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CAAGATCAAT
NTCAAGGTCA--
 A C G T A C G T G T A C C G T A C G T A A C T G C G T A A G C T A G T C G T C A C G T A G C A T
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:9
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----CAAGATCAAT---
TATTCAAGGTCATGCGA
 A C G T A C G T A C G T A C G T G T A C C G T A C G T A A C T G C G T A A G C T A G T C G T C A C G T A G C A T A C G T A C G T A C G T
C A G T G T C A A C G T A G C T T A G C C T G A C T G A C A T G C A T G C A G T A G T C C T G A G C A T T C A G A G T C A C T G G T C A

PB0144.1_Lef1_2/Jaspar

Match Rank:10
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CAAGATCAAT------
GAAGATCAATCACTTA
 G T A C C G T A C G T A A C T G C G T A A G C T A G T C G T C A C G T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T
T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A