Information for 3-CAGCCCCAGACBMSTC (Motif 3)

A G T C C G T A A T C G A G T C A G T C A T G C G T A C C G T A A C T G C T G A T A G C A C T G G T C A A T C G A C G T A T G C
Reverse Opposite:
A T C G T G C A A T G C A C G T T A G C A T C G A G C T A G T C A C G T A C T G A T C G A C T G A C T G A T G C C G A T A C T G
p-value:1e-12
log p-value:-2.854e+01
Information Content per bp:1.759
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.37%
Number of Background Sequences with motif18.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets56.2 +/- 20.5bp
Average Position of motif in Background51.1 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CAGCCCCAGACBMSTC
-AGCCTCAGGCA----
 A G T C C G T A A T C G A G T C A G T C A T G C G T A C C G T A A C T G C T G A T A G C A C T G G T C A A T C G A C G T A T G C
A C G T G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T A C G T A C G T A C G T

PB0202.1_Zfp410_2/Jaspar

Match Rank:2
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CAGCCCCAGACBMSTC
TCACCCCGCCCCAAATT----
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A T C G A G T C A G T C A T G C G T A C C G T A A C T G C T G A T A G C A C T G G T C A A T C G A C G T A T G C
A G C T G A T C G T C A A G T C G A T C A G T C A G T C A C T G T G A C A G T C T G A C A T G C C G A T G C T A G T C A G A C T G C A T A C G T A C G T A C G T A C G T

PB0110.1_Bcl6b_2/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CAGCCCCAGACBMSTC
ATCCCCGCCCCTAAAA----
 A C G T A C G T A C G T A C G T A G T C C G T A A T C G A G T C A G T C A T G C G T A C C G T A A C T G C T G A T A G C A C T G G T C A A T C G A C G T A T G C
G T C A A C G T A T G C A T G C A G T C G A T C C T A G G A T C T G A C A T G C A G T C C G A T G C T A G T C A G C T A T G C A A C G T A C G T A C G T A C G T

TFAP2A/MA0003.3/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAGCCCCAGACBMSTC
-CGCCTCAGGCA----
 A G T C C G T A A T C G A G T C A G T C A T G C G T A C C G T A A C T G C T G A T A G C A C T G G T C A A T C G A C G T A T G C
A C G T G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T A C G T A C G T A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CAGCCCCAGACBMSTC
-AGCCTCAGGCA----
 A G T C C G T A A T C G A G T C A G T C A T G C G T A C C G T A A C T G C T G A T A G C A C T G G T C A A T C G A C G T A T G C
A C G T G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:CAGCCCCAGACBMSTC
-----CCAGACRSVB-
 A G T C C G T A A T C G A G T C A G T C A T G C G T A C C G T A A C T G C T G A T A G C A C T G G T C A A T C G A C G T A T G C
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CAGCCCCAGACBMSTC
AAACCACAGAN-----
 A G T C C G T A A T C G A G T C A G T C A T G C G T A C C G T A A C T G C T G A T A G C A C T G G T C A A T C G A C G T A T G C
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CAGCCCCAGACBMSTC
CGCCCCCTGACA----
 A G T C C G T A A T C G A G T C A G T C A T G C G T A C C G T A A C T G C T G A T A G C A C T G G T C A A T C G A C G T A T G C
G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T A C G T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CAGCCCCAGACBMSTC
--GCCTCAGGGCAT--
 A G T C C G T A A T C G A G T C A G T C A T G C G T A C C G T A A C T G C T G A T A G C A C T G G T C A A T C G A C G T A T G C
A C G T A C G T A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T A C G T A C G T

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CAGCCCCAGACBMSTC
ATTGCCTGAGGCAAT--
 A C G T A G T C C G T A A T C G A G T C A G T C A T G C G T A C C G T A A C T G C T G A T A G C A C T G G T C A A T C G A C G T A T G C
G C T A G C A T G C A T A T C G A G T C A G T C A G C T A T C G T C G A T C A G A C T G T A G C C T A G G C T A C G A T A C G T A C G T