Information for 9-CCTCATGGTGGGTHCA (Motif 16)

T G A C A G T C G A C T G T A C G T C A C G A T A C T G T A C G C A G T C A T G A T C G A T C G C A G T G T C A A T G C G T C A
Reverse Opposite:
C A G T A T C G C A G T G T C A A T G C A T G C G T A C G T C A A T G C A G T C G C T A A C G T A C T G C G T A C T A G A C T G
p-value:1e-9
log p-value:-2.240e+01
Information Content per bp:1.691
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.64%
Number of Background Sequences with motif59.5
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets64.2 +/- 16.6bp
Average Position of motif in Background53.8 +/- 27.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0206.1_Zic2_2/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CCTCATGGTGGGTHCA
TCNCCTGCTGNGNNN-
 T G A C A G T C G A C T G T A C G T C A C G A T A C T G T A C G C A G T C A T G A T C G A T C G C A G T G T C A A T G C G T C A
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T

GLIS3/MA0737.1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CCTCATGGTGGGTHCA
CTTCGTGGGGGGTC--
 T G A C A G T C G A C T G T A C G T C A C G A T A C T G T A C G C A G T C A T G A T C G A T C G C A G T G T C A A T G C G T C A
T A G C C A G T G C A T G A T C T C A G G A C T C T A G A C T G C T A G C T A G A C T G T A C G A G C T T G A C A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCTCATGGTGGGTHCA
GGCCYCCTGCTGDGH---
 A C G T A C G T T G A C A G T C G A C T G T A C G T C A C G A T A C T G T A C G C A G T C A T G A T C G A T C G C A G T G T C A A T G C G T C A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCTCATGGTGGGTHCA
CCCCCTGCTGTG----
 T G A C A G T C G A C T G T A C G T C A C G A T A C T G T A C G C A G T C A T G A T C G A T C G C A G T G T C A A T G C G T C A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCTCATGGTGGGTHCA
TNTCCTGCTGTGNNG-
 T G A C A G T C G A C T G T A C G T C A C G A T A C T G T A C G C A G T C A T G A T C G A T C G C A G T G T C A A T G C G T C A
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCTCATGGTGGGTHCA
NNTCCTGCTGTGNNN-
 T G A C A G T C G A C T G T A C G T C A C G A T A C T G T A C G C A G T C A T G A T C G A T C G C A G T G T C A A T G C G T C A
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T

GLIS1/MA0735.1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CCTCATGGTGGGTHCA
GCTTCGTGGGGGGTCT-
 A C G T T G A C A G T C G A C T G T A C G T C A C G A T A C T G T A C G C A G T C A T G A T C G A T C G C A G T G T C A A T G C G T C A
T A C G G T A C C G A T G C A T G T A C A C T G G A C T A C T G C T A G A T C G A T C G C A T G A T C G G C A T T G A C C A G T A C G T

PB0156.1_Plagl1_2/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CCTCATGGTGGGTHCA----
---GCTGGGGGGTACCCCTT
 T G A C A G T C G A C T G T A C G T C A C G A T A C T G T A C G C A G T C A T G A T C G A T C G C A G T G T C A A T G C G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G A G T C G C A T C T A G C A T G A C T G C T A G A C T G A C T G A C G T C T G A G A T C G T A C G T A C G A T C G A C T C G A T

PB0025.1_Glis2_1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CCTCATGGTGGGTHCA--
--NTNTGGGGGGTCNNNA
 T G A C A G T C G A C T G T A C G T C A C G A T A C T G T A C G C A G T C A T G A T C G A T C G C A G T G T C A A T G C G T C A A C G T A C G T
A C G T A C G T G T A C G A C T T C A G A C G T C T A G C T A G C A T G C A T G A C T G A C T G A C G T T G A C A T C G C G T A C G A T C T G A

PB0101.1_Zic1_1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--CCTCATGGTGGGTHCA
CACCCCCGGGGGGG----
 A C G T A C G T T G A C A G T C G A C T G T A C G T C A C G A T A C T G T A C G C A G T C A T G A T C G A T C G C A G T G T C A A T G C G T C A
A T G C G T C A G A T C G T A C G T A C A T G C T A G C A T C G T A C G A C T G A C T G C A T G A C T G A T C G A C G T A C G T A C G T A C G T