Information for 7-TGGTCCCCTTTGTCCC (Motif 12)

A C G T A C T G A C T G A C G T A G T C A G T C T G A C G T A C A C G T G C A T A C G T A C T G A C G T A T G C A G T C A G T C
Reverse Opposite:
A C T G A C T G A T C G C G T A A G T C C G T A C G T A G T C A A C T G A C T G C T A G C T A G C G T A A G T C A G T C C G T A
p-value:1e-10
log p-value:-2.527e+01
Information Content per bp:1.894
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.8 +/- 28.3bp
Average Position of motif in Background45.2 +/- 10.4bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.67
Offset:6
Orientation:forward strand
Alignment:TGGTCCCCTTTGTCCC
------YCTTTGTTCC
 A C G T A C T G A C T G A C G T A G T C A G T C T G A C G T A C A C G T G C A T A C G T A C T G A C G T A T G C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.65
Offset:3
Orientation:forward strand
Alignment:TGGTCCCCTTTGTCCC-
---TGACCTTTGCCCCA
 A C G T A C T G A C T G A C G T A G T C A G T C T G A C G T A C A C G T G C A T A C G T A C T G A C G T A T G C A G T C A G T C A C G T
A C G T A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:3
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TGGTCCCCTTTGTCCC--
---TGACCTTTGCCCTAN
 A C G T A C T G A C T G A C G T A G T C A G T C T G A C G T A C A C G T G C A T A C G T A C T G A C G T A T G C A G T C A G T C A C G T A C G T
A C G T A C G T A C G T C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.64
Offset:6
Orientation:forward strand
Alignment:TGGTCCCCTTTGTCCC
------CCTTTGTTTT
 A C G T A C T G A C T G A C G T A G T C A G T C T G A C G T A C A C G T G C A T A C G T A C T G A C G T A T G C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:5
Score:0.62
Offset:6
Orientation:forward strand
Alignment:TGGTCCCCTTTGTCCC
------CCWTTGTYYB
 A C G T A C T G A C T G A C G T A G T C A G T C T G A C G T A C A C G T G C A T A C G T A C T G A C G T A T G C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.62
Offset:6
Orientation:forward strand
Alignment:TGGTCCCCTTTGTCCC
------CCTTTGTT--
 A C G T A C T G A C T G A C G T A G T C A G T C T G A C G T A C A C G T G C A T A C G T A C T G A C G T A T G C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:TGGTCCCCTTTGTCCC-
---TGACCTTTGCCCTA
 A C G T A C T G A C T G A C G T A G T C A G T C T G A C G T A C A C G T G C A T A C G T A C T G A C G T A T G C A G T C A G T C A C G T
A C G T A C G T A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.60
Offset:6
Orientation:forward strand
Alignment:TGGTCCCCTTTGTCCC
------CCWTTGTY--
 A C G T A C T G A C T G A C G T A G T C A G T C T G A C G T A C A C G T G C A T A C G T A C T G A C G T A T G C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.60
Offset:5
Orientation:forward strand
Alignment:TGGTCCCCTTTGTCCC
-----NCCATTGTTC-
 A C G T A C T G A C T G A C G T A G T C A G T C T G A C G T A C A C G T G C A T A C G T A C T G A C G T A T G C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.59
Offset:6
Orientation:forward strand
Alignment:TGGTCCCCTTTGTCCC
------CCATTGTTTT
 A C G T A C T G A C T G A C G T A G T C A G T C T G A C G T A C A C G T G C A T A C G T A C T G A C G T A T G C A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T