Information for 13-CMTGCTCKGCRGK (Motif 20)

A G T C T G C A A C G T A C T G A G T C A C G T A G T C A C T G A C T G A G T C C T A G A C T G A C G T
Reverse Opposite:
G T C A A G T C A G T C C T A G A G T C G T A C A C T G C G T A A C T G A G T C C G T A A C G T A C T G
p-value:1e-6
log p-value:-1.405e+01
Information Content per bp:1.873
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets59.6 +/- 26.6bp
Average Position of motif in Background39.8 +/- 15.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0205.1_Zic1_2/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CMTGCTCKGCRGK
TNTCCTGCTGTGNNG-
 A C G T A C G T A C G T A G T C T G C A A C G T A C T G A G T C A C G T A G T C A C T G A C T G A G T C C T A G A C T G A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CMTGCTCKGCRGK
TCNCCTGCTGNGNNN-
 A C G T A C G T A C G T A G T C T G C A A C G T A C T G A G T C A C G T A G T C A C T G A C T G A G T C C T A G A C T G A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CMTGCTCKGCRGK
NNTCCTGCTGTGNNN-
 A C G T A C G T A C G T A G T C T G C A A C G T A C T G A G T C A C G T A G T C A C T G A C T G A G T C C T A G A C T G A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CMTGCTCKGCRGK
CCCCCTGCTGTG----
 A C G T A C G T A C G T A G T C T G C A A C G T A C T G A G T C A C G T A G T C A C T G A C T G A G T C C T A G A C T G A C G T
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CMTGCTCKGCRGK
CCTGCTGAGH---
 A G T C T G C A A C G T A C T G A G T C A C G T A G T C A C T G A C T G A G T C C T A G A C T G A C G T
A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:6
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----CMTGCTCKGCRGK
GGCCYCCTGCTGDGH---
 A C G T A C G T A C G T A C G T A C G T A G T C T G C A A C G T A C T G A G T C A C G T A G T C A C T G A C T G A G T C C T A G A C T G A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CMTGCTCKGCRGK
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A G T C T G C A A C G T A C T G A G T C A C G T A G T C A C T G A C T G A G T C C T A G A C T G A C G T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

POL013.1_MED-1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CMTGCTCKGCRGK
---GCTCCG----
 A G T C T G C A A C G T A C T G A G T C A C G T A G T C A C T G A C T G A G T C C T A G A C T G A C G T
A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CMTGCTCKGCRGK----
GTCACGCTTGGCTGCNCNN
 A C G T A C G T A G T C T G C A A C G T A C T G A G T C A C G T A G T C A C T G A C T G A G T C C T A G A C T G A C G T A C G T A C G T A C G T A C G T
C A T G G A C T A G T C G T C A G A T C T C A G T A G C G A C T A G C T A T C G T C A G A T G C G A C T C T A G T G A C G A T C A G T C G C A T A G T C

PB0199.1_Zfp161_2/Jaspar

Match Rank:10
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CMTGCTCKGCRGK
NNGCNCTGCGCGGC---
 A C G T A C G T A C G T A C G T A G T C T G C A A C G T A C T G A G T C A C G T A G T C A C T G A C T G A G T C C T A G A C T G A C G T
T C G A A G T C C A T G G A T C T G C A G A T C C A G T A C T G A G T C C T A G A T G C C T A G C T A G G T A C A C G T A C G T A C G T