Information for 12-GAAGATTAATCTT (Motif 18)

A T C G T C G A C G T A A C T G C T G A C G A T C A G T C T G A C G T A A G C T A G T C A C G T A G C T
Reverse Opposite:
T C G A C G T A T C A G C T G A C G A T A G C T G C T A G C T A A G C T A G T C A C G T A G C T A T G C
p-value:1e-6
log p-value:-1.566e+01
Information Content per bp:1.730
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.49%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets53.5 +/- 38.0bp
Average Position of motif in Background63.6 +/- 18.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0130.1_Otx2/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GAAGATTAATCTT----
GANNATTAATCCCTNNN
 A T C G T C G A C G T A A C T G C T G A C G A T C A G T C T G A C G T A A G C T A G T C A C G T A G C T A C G T A C G T A C G T A C G T
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

PH0138.1_Pitx2/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GAAGATTAATCTT----
GNNNATTAATCCCTNCN
 A T C G T C G A C G T A A C T G C T G A C G A T C A G T C T G A C G T A A G C T A G T C A C G T A G C T A C G T A C G T A C G T A C G T
C T A G G C T A G A C T C T A G C T G A G A C T C G A T C G T A C T G A A C G T G A T C A G T C A G T C A G C T G C A T G T A C G T C A

POL008.1_DCE_S_I/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GAAGATTAATCTT
NGAAGC--------
 A C G T A T C G T C G A C G T A A C T G C T G A C G A T C A G T C T G A C G T A A G C T A G T C A C G T A G C T
T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0129.1_Otx1/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GAAGATTAATCTT-
AGAGGGGATTAATTTAT
 A C G T A C G T A C G T A T C G T C G A C G T A A C T G C T G A C G A T C A G T C T G A C G T A A G C T A G T C A C G T A G C T A C G T
C T A G C A T G C G T A C T A G T A C G C T A G C A T G G T C A A C G T C G A T C G T A C G T A G A C T G C A T G A C T G C T A A G C T

PH0015.1_Crx/Jaspar

Match Rank:5
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GAAGATTAATCTT
CGTTGGGGATTAGCCT-
 A C G T A C G T A C G T A C G T A T C G T C G A C G T A A C T G C T G A C G A T C A G T C T G A C G T A A G C T A G T C A C G T A G C T
A G T C A C T G C G A T C G A T T A C G T A C G C T A G A C T G G T C A A C G T C G A T C G T A C T A G A G T C A T G C C A G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GAAGATTAATCTT
-NGGATTAA----
 A T C G T C G A C G T A A C T G C T G A C G A T C A G T C T G A C G T A A G C T A G T C A C G T A G C T
A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A A C G T A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:7
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:GAAGATTAATCTT
-----YTAATCCY
 A T C G T C G A C G T A A C T G C T G A C G A T C A G T C T G A C G T A A G C T A G T C A C G T A G C T
A C G T A C G T A C G T A C G T A C G T G A T C G C A T C G T A C G T A A C G T G A T C G A T C A G T C

Crx/MA0467.1/Jaspar

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GAAGATTAATCTT
AAGAGGATTAG----
 A C G T A C G T A T C G T C G A C G T A A C T G C T G A C G A T C A G T C T G A C G T A A G C T A G T C A C G T A G C T
T C G A C T G A C T A G T C G A C T A G A C T G G T C A A C G T A G C T C G T A C T A G A C G T A C G T A C G T A C G T

PH0124.1_Obox5_1/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GAAGATTAATCTT-
TAGAGGGATTAAATTTC
 A C G T A C G T A C G T A T C G T C G A C G T A A C T G C T G A C G A T C A G T C T G A C G T A A G C T A G T C A C G T A G C T A C G T
G C A T C T G A T C A G T C G A T C A G C T A G C A T G C G T A A C G T C G A T C G T A C G T A G C T A G A C T A G C T G C A T G T A C

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GAAGATTAATCTT
VRGGATTARN---
 A T C G T C G A C G T A A C T G C T G A C G A T C A G T C T G A C G T A A G C T A G T C A C G T A G C T
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T A C G T A C G T