Information for 4-CTGCCCTGCTGGT (Motif 9)

A G T C G C A T A C T G A G T C A G T C A G T C C G A T A C T G A T G C A G C T C A T G A T C G A C G T
Reverse Opposite:
T G C A A T G C G A T C T C G A T A C G T G A C G C T A T A C G C T A G T A C G T G A C C G T A T A C G
p-value:1e-10
log p-value:-2.473e+01
Information Content per bp:1.740
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif3.44%
Number of Background Sequences with motif369.7
Percentage of Background Sequences with motif0.78%
Average Position of motif in Targets53.9 +/- 28.7bp
Average Position of motif in Background47.3 +/- 31.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CTGCCCTGCTGGT
-CCCCCTGCTGTG
 A G T C G C A T A C T G A G T C A G T C A G T C C G A T A C T G A T G C A G C T C A T G A T C G A C G T
A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CTGCCCTGCTGGT-
-TGCCCTGAGGGCA
 A G T C G C A T A C T G A G T C A G T C A G T C C G A T A C T G A T G C A G C T C A T G A T C G A C G T A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CTGCCCTGCTGGT---
-TCNCCTGCTGNGNNN
 A G T C G C A T A C T G A G T C A G T C A G T C C G A T A C T G A T G C A G C T C A T G A T C G A C G T A C G T A C G T A C G T
A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:4
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CTGCCCTGCTGGT-
----CCTGCTGAGH
 A G T C G C A T A C T G A G T C A G T C A G T C C G A T A C T G A T G C A G C T C A T G A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTGCCCTGCTGGT-
GGCCYCCTGCTGDGH
 A C G T A G T C G C A T A C T G A G T C A G T C A G T C C G A T A C T G A T G C A G C T C A T G A T C G A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTGCCCTGCTGGT
CTGCCCGCA----
 A G T C G C A T A C T G A G T C A G T C A G T C C G A T A C T G A T G C A G C T C A T G A T C G A C G T
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CTGCCCTGCTGGT-
-TGCCCTGAGGGCA
 A G T C G C A T A C T G A G T C A G T C A G T C C G A T A C T G A T G C A G C T C A T G A T C G A C G T A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T A C T G T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CTGCCCTGCTGGT-
-TGCCCTGAGGGCA
 A G T C G C A T A C T G A G T C A G T C A G T C C G A T A C T G A T G C A G C T C A T G A T C G A C G T A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTGCCCTGCTGGT---
-TNTCCTGCTGTGNNG
 A G T C G C A T A C T G A G T C A G T C A G T C C G A T A C T G A T G C A G C T C A T G A T C G A C G T A C G T A C G T A C G T
A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTGCCCTGCTGGT
-TGCCCAGNHW--
 A G T C G C A T A C T G A G T C A G T C A G T C C G A T A C T G A T G C A G C T C A T G A T C G A C G T
A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T