Information for 2-YCMCWGCCCCARGCCT (Motif 3)

A G C T A G T C G T A C A G T C C G A T A C T G G T A C A G T C A G T C A G T C C G T A C T A G A C T G A G T C G T A C A C G T
Reverse Opposite:
C G T A A C T G A C T G A G T C A G T C A C G T A C T G A C T G A C T G A C T G A G T C C G T A A C T G A C T G A C T G C T G A
p-value:1e-13
log p-value:-3.037e+01
Information Content per bp:1.896
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.3 +/- 14.9bp
Average Position of motif in Background37.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2A/MA0003.3/Jaspar

Match Rank:1
Score:0.67
Offset:4
Orientation:forward strand
Alignment:YCMCWGCCCCARGCCT
----CGCCTCAGGCA-
 A G C T A G T C G T A C A G T C C G A T A C T G G T A C A G T C A G T C A G T C C G T A C T A G A C T G A G T C G T A C A C G T
A C G T A C G T A C G T A C G T G T A C T A C G A T G C A G T C A G C T T A G C T G C A T C A G A T C G T A G C C G T A A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.65
Offset:8
Orientation:reverse strand
Alignment:YCMCWGCCCCARGCCT
--------CNAGGCCT
 A G C T A G T C G T A C A G T C C G A T A C T G G T A C A G T C A G T C A G T C C G T A C T A G A C T G A G T C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:3
Score:0.65
Offset:4
Orientation:forward strand
Alignment:YCMCWGCCCCARGCCT
----AGCCTCAGGCA-
 A G C T A G T C G T A C A G T C C G A T A C T G G T A C A G T C A G T C A G T C C G T A C T A G A C T G A G T C G T A C A C G T
A C G T A C G T A C G T A C G T G T C A T A C G A T G C A G T C A G C T T A G C T G C A T C A G T A C G T A G C C G T A A C G T

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:4
Score:0.63
Offset:4
Orientation:forward strand
Alignment:YCMCWGCCCCARGCCT
----AGCCTCAGGCA-
 A G C T A G T C G T A C A G T C C G A T A C T G G T A C A G T C A G T C A G T C C G T A C T A G A C T G A G T C G T A C A C G T
A C G T A C G T A C G T A C G T G T C A T A C G A T G C A G T C A G C T T A G C T C G A T C A G A T C G T A G C C G T A A C G T

Zfx/MA0146.2/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:forward strand
Alignment:YCMCWGCCCCARGCCT-
---GGGGCCGAGGCCTG
 A G C T A G T C G T A C A G T C C G A T A C T G G T A C A G T C A G T C A G T C C G T A C T A G A C T G A G T C G T A C A C G T A C G T
A C G T A C G T A C G T A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:6
Score:0.61
Offset:8
Orientation:reverse strand
Alignment:YCMCWGCCCCARGCCT
--------CTAGGCCT
 A G C T A G T C G T A C A G T C C G A T A C T G G T A C A G T C A G T C A G T C C G T A C T A G A C T G A G T C G T A C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:7
Score:0.61
Offset:4
Orientation:forward strand
Alignment:YCMCWGCCCCARGCCT
----TGCCCCCGGGCA
 A G C T A G T C G T A C A G T C C G A T A C T G G T A C A G T C A G T C A G T C C G T A C T A G A C T G A G T C G T A C A C G T
A C G T A C G T A C G T A C G T G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A

TFAP2B/MA0811.1/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:forward strand
Alignment:YCMCWGCCCCARGCCT
----TGCCCCAGGGCA
 A G C T A G T C G T A C A G T C C G A T A C T G G T A C A G T C A G T C A G T C C G T A C T A G A C T G A G T C G T A C A C G T
A C G T A C G T A C G T A C G T G A C T T A C G A T G C G A T C A G T C A G T C T C G A T C A G T C A G T A C G A T G C C T G A

TFAP2C/MA0524.2/Jaspar

Match Rank:9
Score:0.60
Offset:4
Orientation:forward strand
Alignment:YCMCWGCCCCARGCCT
----TGCCCCAGGGCA
 A G C T A G T C G T A C A G T C C G A T A C T G G T A C A G T C A G T C A G T C C G T A C T A G A C T G A G T C G T A C A C G T
A C G T A C G T A C G T A C G T G A C T T A C G T A G C G A T C A G T C A G T C T C G A T C A G C T A G T A C G A T G C C T G A

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:YCMCWGCCCCARGCCT-
-----GCCTCAGGGCAT
 A G C T A G T C G T A C A G T C C G A T A C T G G T A C A G T C A G T C A G T C C G T A C T A G A C T G A G T C G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T C G A G T C A G T C A G C T A T G C C T G A C T A G A C T G A T C G G T A C G C T A C G A T