Information for 5-VTGGAAATGAGHA (Motif 8)

T A C G A C G T A C T G A T C G C G T A T C G A C G T A A C G T A C T G C T G A A C T G G A T C G T C A
Reverse Opposite:
A C G T C A T G A G T C A G C T A G T C C G T A A C G T A G C T A C G T A T G C A G T C C G T A A T G C
p-value:1e-10
log p-value:-2.480e+01
Information Content per bp:1.851
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif10.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets56.1 +/- 25.3bp
Average Position of motif in Background37.3 +/- 25.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-VTGGAAATGAGHA
WATGCAAATGAG--
 A C G T T A C G A C G T A C T G A T C G C G T A T C G A C G T A A C G T A C T G C T G A A C T G G A T C G T C A
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T A C G T

POU1F1/MA0784.1/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---VTGGAAATGAGHA
AATATGCAAATTAG--
 A C G T A C G T A C G T T A C G A C G T A C T G A T C G C G T A T C G A C G T A A C G T A C T G C T G A A C T G G A T C G T C A
C G T A C G T A C G A T C T G A G A C T C A T G A G T C G C T A C G T A G T C A C G A T A C G T C G T A C T A G A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--VTGGAAATGAGHA
ATATGCAAATNNN--
 A C G T A C G T T A C G A C G T A C T G A T C G C G T A T C G A C G T A A C G T A C T G C T G A A C T G G A T C G T C A
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-VTGGAAATGAGHA
TATGCWAATBAV--
 A C G T T A C G A C G T A C T G A T C G C G T A T C G A C G T A A C G T A C T G C T G A A C T G G A T C G T C A
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:5
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----VTGGAAATGAGHA
TTGTATGCAAATTAGA-
 A C G T A C G T A C G T A C G T T A C G A C G T A C T G A T C G C G T A T C G A C G T A A C G T A C T G C T G A A C T G G A T C G T C A
A G C T G C A T C A T G G C A T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A C T A G T G C A A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----VTGGAAATGAGHA
TTGTATGCAAATTAGA-
 A C G T A C G T A C G T A C G T T A C G A C G T A C T G A T C G C G T A T C G A C G T A A C G T A C T G C T G A A C T G G A T C G T C A
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T

PH0145.1_Pou2f3/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----VTGGAAATGAGHA
TTGTATGCAAATTAGA-
 A C G T A C G T A C G T A C G T T A C G A C G T A C T G A T C G C G T A T C G A C G T A A C G T A C T G C T G A A C T G G A T C G T C A
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--VTGGAAATGAGHA
TTATGCAAATTA---
 A C G T A C G T T A C G A C G T A C T G A T C G C G T A T C G A C G T A A C G T A C T G C T G A A C T G G A T C G T C A
C G A T G C A T T C G A G A C T C A T G A G T C G C T A C G T A G C T A C G A T A C G T G C T A A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--VTGGAAATGAGHA
TTATGCAAAT-----
 A C G T A C G T T A C G A C G T A C T G A T C G C G T A T C G A C G T A A C G T A C T G C T G A A C T G G A T C G T C A
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T

POU3F1/MA0786.1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--VTGGAAATGAGHA
TTATGCAAATTA---
 A C G T A C G T T A C G A C G T A C T G A T C G C G T A T C G A C G T A A C G T A C T G C T G A A C T G G A T C G T C A
C G A T G C A T C T G A G A C T C A T G A G T C C G T A C G T A C G T A C G A T C A G T G C T A A C G T A C G T A C G T